halophFGD

Basic Information

Locus ID: Lb2G10874

Species & Taxonomic ID: Limonium bicolor & 293754

Genome Assembly: GCA_023374045.1

Description: F-box kelch-repeat protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr02	139897323	139898557	+	Lb2G10874

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.15	41,658.06 Da	46.32	92.44	-0.18

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00646	F-box domain	23	57	5.6E-9	IPR001810
Pfam	PF00646	F-box domain	23	57	5.6E-9	IPR001810
SUPERFAMILY	SSF81383	F-box domain	19	68	1.02E-11	IPR036047
SUPERFAMILY	SSF81383	F-box domain	19	68	1.02E-11	IPR036047
Gene3D	G3DSA:1.20.1280.50	-	7	55	1.4E-8	-
Gene3D	G3DSA:1.20.1280.50	-	7	55	1.4E-8	-
SMART	SM00256	fbox_2	19	59	1.8E-9	IPR001810
SMART	SM00256	fbox_2	19	59	1.8E-9	IPR001810
ProSiteProfiles	PS50181	F-box domain profile.	13	60	11.696505	IPR001810
ProSiteProfiles	PS50181	F-box domain profile.	13	60	11.696505	IPR001810

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G33530.1	F-box family protein.
RefSeq	XP_021850615.1	putative F-box protein At5g62660 [Spinacia oleracea]
Swiss-Prot	Q9C800	Putative F-box protein At1g33530 OS=Arabidopsis thaliana OX=3702 GN=At1g33530 PE=4 SV=1
TrEMBL	A0A5J5A587	F-box domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_010900 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Aizoaceae	Mesembryanthemum crystallinum	29	gene_12224, gene_12225, gene_12226, gene_12227, gene_12228 ... gene_12833, gene_13687, gene_13691, gene_13692, gene_13693, gene_13694, gene_13696, gene_13697, gene_13698, gene_13699, gene_13716, gene_13748, gene_13894, gene_13895, gene_19546, gene_19554, gene_19555, gene_22758, gene_5204, gene_7945, gene_7946, gene_8690, gene_8691, gene_8693
Amaranthaceae	Atriplex hortensis	24	Ah000678, Ah000681, Ah000683, Ah000684, Ah000689, Ah000693 ... Ah000696, Ah000697, Ah000700, Ah000701, Ah000705, Ah001044, Ah001150, Ah001198, Ah001199, Ah001205, Ah001207, Ah001265, Ah018107, Ah024122, Ah030707, Ah030865, Ah030866, Ah035819
Amaranthaceae	Beta vulgaris	1	BVRB_5g116570
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg21175, Sbi_jg22628, Sbi_jg30470, Sbi_jg30490 ... Sbi_jg58760, Sbi_jg58781
Amaranthaceae	Salicornia europaea	3	Seu_jg16516, Seu_jg28633, Seu_jg28651
Amaranthaceae	Suaeda aralocaspica	5	GOSA_00014232, GOSA_00014233, GOSA_00014978, GOSA_00014983 ... GOSA_00015001
Amaranthaceae	Suaeda glauca	31	Sgl01161, Sgl01173, Sgl06260, Sgl10884, Sgl12033, Sgl12232 ... Sgl12280, Sgl12356, Sgl16239, Sgl17326, Sgl17464, Sgl17510, Sgl17636, Sgl24281, Sgl29456, Sgl34160, Sgl34161, Sgl34162, Sgl39794, Sgl45422, Sgl45476, Sgl55268, Sgl55270, Sgl55271, Sgl55289, Sgl60533, Sgl60535, Sgl60555, Sgl79945, Sgl82377, Sgl82378
Amaranthaceae	Chenopodium album	18	gene:ENSEOMG00000005540, gene:ENSEOMG00000005896 ... gene:ENSEOMG00000006320, gene:ENSEOMG00000007498, gene:ENSEOMG00000008056, gene:ENSEOMG00000011411, gene:ENSEOMG00000015361, gene:ENSEOMG00000015503, gene:ENSEOMG00000023015, gene:ENSEOMG00000023968, gene:ENSEOMG00000024282, gene:ENSEOMG00000024366, gene:ENSEOMG00000024685, gene:ENSEOMG00000024870, gene:ENSEOMG00000025823, gene:ENSEOMG00000026035, gene:ENSEOMG00000026127, gene:ENSEOMG00000033242
Amaranthaceae	Chenopodium quinoa	23	CQ.Regalona.r1.1AG0004930, CQ.Regalona.r1.5AG0021990 ... CQ.Regalona.r1.5AG0022160, CQ.Regalona.r1.5AG0022370, CQ.Regalona.r1.5AG0022400, CQ.Regalona.r1.5AG0022420, CQ.Regalona.r1.5AG0022430, CQ.Regalona.r1.5AG0022480, CQ.Regalona.r1.5AG0022490, CQ.Regalona.r1.5AG0022500, CQ.Regalona.r1.5BG0020380, CQ.Regalona.r1.5BG0023570, CQ.Regalona.r1.5BG0023770, CQ.Regalona.r1.5BG0023800, CQ.Regalona.r1.5BG0023810, CQ.Regalona.r1.5BG0023850, CQ.Regalona.r1.5BG0023860, CQ.Regalona.r1.5BG0023870, CQ.Regalona.r1.7AG0011730, CQ.Regalona.r1.8BG0006100, CQ.Regalona.r1.8BG0013090, CQ.Regalona.r1.8BG0014890, CQ.Regalona.r1.8BG0015780
Plumbaginaceae	Limonium bicolor	2	Lb2G10874, Lb3G17282
Portulacaceae	Portulaca oleracea	15	evm.TU.LG01.2534, evm.TU.LG01.2535, evm.TU.LG01.2536 ... evm.TU.LG01.2541, evm.TU.LG01.2543, evm.TU.LG01.2544, evm.TU.LG01.2545, evm.TU.LG02.884, evm.TU.LG14.1673, evm.TU.LG14.1674, evm.TU.LG14.1675, evm.TU.LG14.1680, evm.TU.LG14.1681, evm.TU.LG14.1682, evm.TU.LG14.1683