Basic Information
Locus ID:
Lb2G10752
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 132474347 | 132477778 | - | Lb2G10752 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.44 | 41,181.92 Da | 63.02 | 91.91 | 0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16474 | RING-H2_RNF111_like | 311 | 355 | 2.4824E-20 | - |
| CDD | cd16474 | RING-H2_RNF111_like | 311 | 355 | 2.4824E-20 | - |
| Pfam | PF13639 | Ring finger domain | 311 | 353 | 1.1E-11 | IPR001841 |
| Pfam | PF13639 | Ring finger domain | 311 | 353 | 1.1E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 305 | 358 | 3.53E-19 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 305 | 358 | 3.53E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 288 | 361 | 3.2E-18 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 288 | 361 | 3.2E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 312 | 352 | 1.7E-5 | IPR001841 |
| SMART | SM00184 | ring_2 | 312 | 352 | 1.7E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 312 | 353 | 11.928664 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 312 | 353 | 11.928664 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G12760.1 | Zinc finger, C3HC4 type (RING finger) family protein. | 0 |
| RefSeq | XP_021735900.1 | LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase At4g11680-like [Chenopodium quinoa] | 0 |
| Q9LN71 | E3 ubiquitin-protein ligase At1g12760 OS=Arabidopsis thaliana OX=3702 GN=At1g12760 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6P5YER3 | E3 ubiquitin-protein ligase At4g11680-like isoform X3 OS=Durio zibethinus OX=66656 GN=LOC111291476 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology