Basic Information
Locus ID:
Lb2G10743
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 131937358 | 131940516 | - | Lb2G10743 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.42 | 41,986.21 Da | 57.97 | 95.66 | 0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16474 | RING-H2_RNF111_like | 316 | 360 | 3.21115E-20 | - |
| CDD | cd16474 | RING-H2_RNF111_like | 316 | 360 | 3.21115E-20 | - |
| Pfam | PF13639 | Ring finger domain | 316 | 358 | 1.1E-11 | IPR001841 |
| Pfam | PF13639 | Ring finger domain | 316 | 358 | 1.1E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 310 | 363 | 3.77E-19 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 310 | 363 | 3.77E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 293 | 366 | 3.3E-18 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 293 | 366 | 3.3E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 317 | 357 | 1.7E-5 | IPR001841 |
| SMART | SM00184 | ring_2 | 317 | 357 | 1.7E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 317 | 358 | 11.928664 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 317 | 358 | 11.928664 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G12760.1 | Zinc finger, C3HC4 type (RING finger) family protein. | 0 |
| RefSeq | XP_021735900.1 | LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase At4g11680-like [Chenopodium quinoa] | 0 |
| Q9LN71 | E3 ubiquitin-protein ligase At1g12760 OS=Arabidopsis thaliana OX=3702 GN=At1g12760 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5B6ZC39 | RING-type domain-containing protein OS=Davidia involucrata OX=16924 GN=Din_010926 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology