Basic Information
Locus ID:
Lb2G10739
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Heat Stress Transcription Factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 131711121 | 131712345 | + | Lb2G10739 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.04 | 36,179.55 Da | 53.44 | 66.63 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00447 | HSF-type DNA-binding | 32 | 121 | 3.0E-33 | IPR000232 |
| Pfam | PF00447 | HSF-type DNA-binding | 32 | 121 | 3.0E-33 | IPR000232 |
| SUPERFAMILY | SSF46785 | Winged helix DNA-binding domain | 29 | 121 | 2.12E-36 | IPR036390 |
| SUPERFAMILY | SSF46785 | Winged helix DNA-binding domain | 29 | 121 | 2.12E-36 | IPR036390 |
| Gene3D | G3DSA:1.10.10.10 | - | 25 | 122 | 1.5E-38 | IPR036388 |
| Gene3D | G3DSA:1.10.10.10 | - | 25 | 122 | 1.5E-38 | IPR036388 |
| SMART | SM00415 | hsfneu3 | 28 | 121 | 1.8E-59 | IPR000232 |
| SMART | SM00415 | hsfneu3 | 28 | 121 | 1.8E-59 | IPR000232 |
| ProSitePatterns | PS00434 | HSF-type DNA-binding domain signature. | 71 | 95 | - | IPR000232 |
| ProSitePatterns | PS00434 | HSF-type DNA-binding domain signature. | 71 | 95 | - | IPR000232 |
| PRINTS | PR00056 | Heat shock factor (HSF) domain signature | 83 | 95 | 9.1E-21 | IPR000232 |
| PRINTS | PR00056 | Heat shock factor (HSF) domain signature | 70 | 82 | 9.1E-21 | IPR000232 |
| PRINTS | PR00056 | Heat shock factor (HSF) domain signature | 32 | 55 | 9.1E-21 | IPR000232 |
| PRINTS | PR00056 | Heat shock factor (HSF) domain signature | 83 | 95 | 9.1E-21 | IPR000232 |
| PRINTS | PR00056 | Heat shock factor (HSF) domain signature | 70 | 82 | 9.1E-21 | IPR000232 |
| PRINTS | PR00056 | Heat shock factor (HSF) domain signature | 32 | 55 | 9.1E-21 | IPR000232 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 308 | 330 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 18 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 297 | 341 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 308 | 330 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 18 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 297 | 341 | - | - |
| Coils | Coil | Coil | 197 | 224 | - | - |
| Coils | Coil | Coil | 197 | 224 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11660.1 | winged-helix DNA-binding transcription factor family protein. member of Heat Stress Transcription Factor (Hsf) family | 0 |
| RefSeq | XP_034674526.1 | heat stress transcription factor B-2b [Vitis riparia] | 0 |
| Q6Z9C8 | Heat stress transcription factor B-2b OS=Oryza sativa subsp. japonica OX=39947 GN=HSFB2B PE=2 SV=1 | 0 | |
| TrEMBL | D3Y3F4 | HSP transcription factor OS=Vitis pseudoreticulata OX=231512 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology