Basic Information
Locus ID:
Lb2G10542
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Short Name:
NTMC2T4.1
Description:
Synaptotagmin-like mitochondrial-lipid-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 118076435 | 118089986 | - | Lb2G10542 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.52 | 55,927.29 Da | 27.65 | 104.37 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 266 | 359 | 5.13603E-27 | - |
| CDD | cd00030 | C2 | 266 | 359 | 5.13603E-27 | - |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 68 | 248 | 6.3E-17 | IPR039010 |
| Pfam | PF00168 | C2 domain | 264 | 359 | 6.6E-23 | IPR000008 |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 68 | 248 | 6.3E-17 | IPR039010 |
| Pfam | PF00168 | C2 domain | 264 | 359 | 6.6E-23 | IPR000008 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 264 | 391 | 4.76E-29 | IPR035892 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 264 | 391 | 4.76E-29 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 259 | 417 | 7.6E-32 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 259 | 417 | 7.6E-32 | IPR035892 |
| SMART | SM00239 | C2_3c | 265 | 362 | 1.2E-21 | IPR000008 |
| SMART | SM00239 | C2_3c | 265 | 362 | 1.2E-21 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 66 | 249 | 23.382053 | IPR031468 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 247 | 363 | 21.415125 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 66 | 249 | 23.382053 | IPR031468 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 247 | 363 | 21.415125 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 306 | 319 | 6.9E-6 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 328 | 336 | 6.9E-6 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 281 | 293 | 6.9E-6 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 281 | 293 | 6.9E-6 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 306 | 319 | 6.9E-6 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 328 | 336 | 6.9E-6 | IPR000008 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 485 | 517 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 486 | 517 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 486 | 517 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 485 | 517 | - | - |
| Coils | Coil | Coil | 391 | 418 | - | - |
| Coils | Coil | Coil | 391 | 418 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61050.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. | 0 |
| RefSeq | XP_031267764.1 | synaptotagmin-5 [Pistacia vera] | 0 |
| Q9LEX1 | Calcium-dependent lipid-binding protein OS=Arabidopsis thaliana OX=3702 GN=CLB PE=1 SV=1 | 0 | |
| TrEMBL | A0A498KHR1 | Synaptotagmin-5 OS=Malus domestica OX=3750 GN=DVH24_026072 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology