Basic Information
Locus ID:
Lb2G10531
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Lignin degradation and detoxification of lignin-derived products
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 117212543 | 117215422 | - | Lb2G10531 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.71 | 65,122.67 Da | 36.70 | 75.74 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd13897 | CuRO_3_LCC_plant | 422 | 561 | 3.60971E-85 | IPR034289 |
| CDD | cd13849 | CuRO_1_LCC_plant | 38 | 154 | 6.04438E-63 | IPR034288 |
| CDD | cd13849 | CuRO_1_LCC_plant | 38 | 154 | 6.04438E-63 | IPR034288 |
| CDD | cd13897 | CuRO_3_LCC_plant | 422 | 561 | 3.60971E-85 | IPR034289 |
| CDD | cd13875 | CuRO_2_LCC_plant | 169 | 317 | 5.07548E-86 | IPR034285 |
| CDD | cd13875 | CuRO_2_LCC_plant | 169 | 317 | 5.07548E-86 | IPR034285 |
| Pfam | PF07732 | Multicopper oxidase | 42 | 156 | 2.1E-38 | IPR011707 |
| Pfam | PF07732 | Multicopper oxidase | 42 | 156 | 2.1E-38 | IPR011707 |
| Pfam | PF00394 | Multicopper oxidase | 169 | 319 | 2.5E-39 | IPR001117 |
| Pfam | PF07731 | Multicopper oxidase | 445 | 561 | 1.9E-39 | IPR011706 |
| Pfam | PF07731 | Multicopper oxidase | 445 | 561 | 1.9E-39 | IPR011706 |
| Pfam | PF00394 | Multicopper oxidase | 169 | 319 | 2.5E-39 | IPR001117 |
| SUPERFAMILY | SSF49503 | Cupredoxins | 162 | 346 | 2.74E-43 | IPR008972 |
| SUPERFAMILY | SSF49503 | Cupredoxins | 162 | 346 | 2.74E-43 | IPR008972 |
| SUPERFAMILY | SSF49503 | Cupredoxins | 34 | 179 | 4.95E-37 | IPR008972 |
| SUPERFAMILY | SSF49503 | Cupredoxins | 389 | 578 | 9.63E-42 | IPR008972 |
| SUPERFAMILY | SSF49503 | Cupredoxins | 389 | 578 | 9.63E-42 | IPR008972 |
| SUPERFAMILY | SSF49503 | Cupredoxins | 34 | 179 | 4.95E-37 | IPR008972 |
| Gene3D | G3DSA:2.60.40.420 | - | 10 | 154 | 6.8E-34 | IPR008972 |
| Gene3D | G3DSA:2.60.40.420 | - | 383 | 578 | 6.2E-61 | IPR008972 |
| Gene3D | G3DSA:2.60.40.420 | - | 383 | 578 | 6.2E-61 | IPR008972 |
| Gene3D | G3DSA:2.60.40.420 | - | 10 | 154 | 6.8E-34 | IPR008972 |
| Gene3D | G3DSA:2.60.40.420 | - | 166 | 353 | 5.0E-46 | IPR008972 |
| Gene3D | G3DSA:2.60.40.420 | - | 166 | 353 | 5.0E-46 | IPR008972 |
| TIGRFAM | TIGR03389 | laccase: laccase | 35 | 578 | 5.3E-252 | IPR017761 |
| TIGRFAM | TIGR03389 | laccase: laccase | 35 | 578 | 5.3E-252 | IPR017761 |
| ProSiteProfiles | PS51257 | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 28 | 5.0 | - |
| ProSiteProfiles | PS51257 | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 28 | 5.0 | - |
| ProSitePatterns | PS00079 | Multicopper oxidases signature 1. | 536 | 556 | - | IPR033138 |
| ProSitePatterns | PS00080 | Multicopper oxidases signature 2. | 541 | 552 | - | IPR002355 |
| ProSitePatterns | PS00079 | Multicopper oxidases signature 1. | 536 | 556 | - | IPR033138 |
| ProSitePatterns | PS00080 | Multicopper oxidases signature 2. | 541 | 552 | - | IPR002355 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G48100.1 | Laccase/Diphenol oxidase family protein. Encodes a protein that is similar to laccase-like polyphenol oxidases. Involved in lignin and flavonoids biosynthesis. It has four conserved copper binding domains. Expressed in developing testa, where it colocalizes with the flavonoid end products proanthocyanidins and flavonols. Mutant plants exhibited a delay in developmentally determined browning of the testa, characterized by the pale brown color of seed coat. The tt10 mutant seeds accumulate more epicatechin monomers and more soluble proanthocyanidins than wild-type seeds. Flavonol composition was also affected in tt10 seeds, which exhibited a higher ratio of quercetin rhamnoside monomers versus dimers than wild-type seeds. | 0 |
| RefSeq | XP_023922649.1 | laccase-15-like isoform X1 [Quercus suber] | 0 |
| Q84J37 | Laccase-15 OS=Arabidopsis thaliana OX=3702 GN=TT10 PE=1 SV=1 | 0 | |
| TrEMBL | A0A834G6I9 | Laccase OS=Rhododendron simsii OX=118357 GN=RHSIM_Rhsim11G0090700 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology