Basic Information
Locus ID:
Lb2G10402
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
fasciclin-like arabinogalactan protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 109542643 | 109546228 | + | Lb2G10402 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.63 | 45,427.01 Da | 35.06 | 88.27 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02469 | Fasciclin domain | 206 | 336 | 5.5E-17 | IPR000782 |
| Pfam | PF02469 | Fasciclin domain | 45 | 121 | 2.6E-5 | IPR000782 |
| Pfam | PF02469 | Fasciclin domain | 45 | 121 | 2.6E-5 | IPR000782 |
| Pfam | PF02469 | Fasciclin domain | 206 | 336 | 5.5E-17 | IPR000782 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 39 | 156 | 2.75E-16 | IPR036378 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 191 | 338 | 2.62E-18 | IPR036378 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 39 | 156 | 2.75E-16 | IPR036378 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 191 | 338 | 2.62E-18 | IPR036378 |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain | 192 | 337 | 4.5E-14 | IPR036378 |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain | 31 | 183 | 4.5E-9 | IPR036378 |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain | 31 | 183 | 4.5E-9 | IPR036378 |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain | 192 | 337 | 4.5E-14 | IPR036378 |
| SMART | SM00554 | fasc_3 | 233 | 337 | 1.5E-17 | IPR000782 |
| SMART | SM00554 | fasc_3 | 233 | 337 | 1.5E-17 | IPR000782 |
| ProSiteProfiles | PS50213 | FAS1/BIgH3 domain profile. | 194 | 334 | 12.287416 | IPR000782 |
| ProSiteProfiles | PS50213 | FAS1/BIgH3 domain profile. | 194 | 334 | 12.287416 | IPR000782 |
| ProSiteProfiles | PS50213 | FAS1/BIgH3 domain profile. | 33 | 181 | 10.611813 | IPR000782 |
| ProSiteProfiles | PS50213 | FAS1/BIgH3 domain profile. | 33 | 181 | 10.611813 | IPR000782 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 344 | 403 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 344 | 403 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G55730.1 | FASCICLIN-like arabinogalactan 1. fasciclin-like arabinogalactan-protein 1 (Fla1) | 0 |
| RefSeq | XP_010243936.1 | PREDICTED: fasciclin-like arabinogalactan protein 1 [Nelumbo nucifera] | 0 |
| Q9FM65 | Fasciclin-like arabinogalactan protein 1 OS=Arabidopsis thaliana OX=3702 GN=FLA1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1U7Z0A2 | fasciclin-like arabinogalactan protein 1 OS=Nelumbo nucifera OX=4432 GN=LOC104587880 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology