Basic Information
Locus ID:
Lb2G10344
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 107538895 | 107539654 | - | Lb2G10344 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.91 | 17,573.05 Da | 38.68 | 98.73 | 0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 7 | 97 | 3.3E-13 | IPR001394 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 7 | 97 | 3.3E-13 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 8 | 103 | 1.28E-24 | IPR038765 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 8 | 103 | 1.28E-24 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 6 | 145 | 7.6E-31 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 6 | 145 | 7.6E-31 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 1 | 158 | 11.39233 | IPR028889 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 1 | 158 | 11.39233 | IPR028889 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22030.1 | ubiquitin-specific protease 8. | 0 |
| RefSeq | XP_020535657.1 | ubiquitin carboxyl-terminal hydrolase 8 isoform X3 [Jatropha curcas] | 0 |
| Q9C585 | Ubiquitin carboxyl-terminal hydrolase 8 OS=Arabidopsis thaliana OX=3702 GN=UBP8 PE=2 SV=2 | 0 | |
| TrEMBL | B9SDL4 | Ubiquitin carboxyl-terminal hydrolase, putative OS=Ricinus communis OX=3988 GN=RCOM_0421990 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology