Basic Information
Locus ID:
Lb2G10260
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Adaptin ear-binding coat-associated protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 102631779 | 102634133 | + | Lb2G10260 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.21 | 30,579.94 Da | 48.51 | 72.44 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd13228 | PHear_NECAP | 13 | 133 | 4.04054E-74 | IPR012466 |
| CDD | cd13228 | PHear_NECAP | 13 | 133 | 4.04054E-74 | IPR012466 |
| Pfam | PF07933 | Protein of unknown function (DUF1681) | 12 | 179 | 9.7E-55 | IPR012466 |
| Pfam | PF07933 | Protein of unknown function (DUF1681) | 12 | 179 | 9.7E-55 | IPR012466 |
| SUPERFAMILY | SSF50729 | PH domain-like | 8 | 137 | 3.2E-48 | - |
| SUPERFAMILY | SSF50729 | PH domain-like | 8 | 137 | 3.2E-48 | - |
| Gene3D | G3DSA:2.30.29.30 | - | 15 | 138 | 3.7E-48 | IPR011993 |
| Gene3D | G3DSA:2.30.29.30 | - | 15 | 138 | 3.7E-48 | IPR011993 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 236 | 283 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 236 | 283 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 260 | 276 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 260 | 276 | - | - |
Gene Ontology
Biological Process:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G03900.1 | non-intrinsic ABC protein 4. member of NAP family, an heterogeneous subfamily of the ATP-binding Cassette (ABC) superfamily of membrane transporters. The NAPs proteins are characterized by having only one nucleotide-binding folds (NBFs) domain. | 0 |
| RefSeq | XP_021633551.1 | uncharacterized protein At1g03900 [Manihot esculenta] | 0 |
| Q681Q7 | Uncharacterized protein At1g03900 OS=Arabidopsis thaliana OX=3702 GN=At1g03900 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J5BQB7 | DUF1681 domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_021124 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg35429, jg8684 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_13478 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah000166 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g121280 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg31407, Sbi_jg57865 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg25505 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00026703 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl54442, Sgl59775 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000006617, gene:ENSEOMG00000023361 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0026480, CQ.Regalona.r1.5BG0028010 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30016190 |
| Apiaceae | Apium graveolens | 1 | Ag2G01320 |
| Arecaceae | Cocos nucifera | 2 | COCNU_07G000760, COCNU_10G000620 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103703921, gene-LOC103717594 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_04.108.V1.1, AsparagusV1_05.1862.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri15G16431, Ftri9G03054, FtriNA16819 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G03900.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10003361m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g02750.v2.2, Sp2g08940.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g000620.2N, BniB06g046850.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G1336 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G1405 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno10g00230 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0038s00018.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g24650 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-6363 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.1315 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00002273 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G10260 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.1771, BH01.2093, CH01.2028 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0127810, gene-QOZ80_2BG0183270 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0042740.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_017530, gene-QYE76_067658 |
| Poaceae | Oryza coarctata | 2 | Oco19G005970, Oco20G005880 |
| Poaceae | Oryza sativa | 1 | LOC_Os10g33630.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G205900 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr05G014450, Chr06G012950, Chr09G011040, Chr13G014180 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G283300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG023230, gene_TRIDC1BG028150 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G153300.1, TraesCS1B02G171600.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb221890_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-19225, nbis-gene-21178 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g13382, Zma_g16187 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.1207, evm.TU.LG09.763 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc02g16560, gene.Posoc06g00600 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_5_RagTag.1112, evm.TU.Scaffold_9_RagTag.1019 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-11584 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-5933, nbisL1-mrna-6155 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-10280, nbisL1-mrna-18293 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000003l.453, evm.TU.utg000006l.386 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00009914, Maker00013307 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-1439, nbisL1-mrna-9905 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-19821, nbisL1-mrna-5032 |
| Salicaceae | Populus euphratica | 1 | populus_peu32877 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132605672, gene-LOC132610518 |
| Solanaceae | Solanum chilense | 2 | SOLCI002109100, SOLCI003771200 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107022051, gene-LOC107029255 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_16438 |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G2698 |
| Zosteraceae | Zostera marina | 1 | Zosma01g38070.v3.1 |