Basic Information
Locus ID:
Lb2G10066
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
RNA polymerase II C-terminal domain phosphatase-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 88574074 | 88578254 | - | Lb2G10066 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.75 | 76,232.58 Da | 47.20 | 88.22 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 255 | 369 | 2.0E-7 | IPR004274 |
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 255 | 369 | 2.0E-7 | IPR004274 |
| SUPERFAMILY | SSF56784 | HAD-like | 138 | 395 | 7.81E-20 | IPR036412 |
| SUPERFAMILY | SSF56784 | HAD-like | 138 | 395 | 7.81E-20 | IPR036412 |
| Gene3D | G3DSA:3.40.50.1000 | - | 138 | 399 | 1.0E-25 | IPR023214 |
| Gene3D | G3DSA:3.40.50.1000 | - | 138 | 399 | 1.0E-25 | IPR023214 |
| SMART | SM00577 | forpap2 | 203 | 379 | 1.3E-10 | IPR004274 |
| SMART | SM00577 | forpap2 | 203 | 379 | 1.3E-10 | IPR004274 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 144 | 395 | 14.977736 | IPR004274 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 144 | 395 | 14.977736 | IPR004274 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 583 | 607 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 583 | 607 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01270.1 | carboxyl-terminal domain (ctd) phosphatase-like 2. Encodes CPL2, a carboxyl-terminal domain (CTD) phosphatase that dephosphorylates CTD Ser5-PO4 of the RNA polymerase II complex. Regulates plant growth, stress and auxin responses. | 0 |
| RefSeq | XP_018825888.1 | RNA polymerase II C-terminal domain phosphatase-like 2 isoform X2 [Juglans regia] | 0 |
| Q5YDB5 | RNA polymerase II C-terminal domain phosphatase-like 2 OS=Arabidopsis thaliana OX=3702 GN=CPL2 PE=1 SV=3 | 0 | |
| TrEMBL | A0A5B7B4W3 | protein-serine/threonine phosphatase OS=Davidia involucrata OX=16924 GN=Din_033481 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology