Basic Information
Locus ID:
Lb2G10061
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
RNA polymerase II C-terminal domain phosphatase-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 88222655 | 88232258 | + | Lb2G10061 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.53 | 93,789.30 Da | 50.74 | 82.14 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10845 | DSRM_RNAse_III_family | 699 | 737 | 7.03312E-11 | - |
| CDD | cd10845 | DSRM_RNAse_III_family | 699 | 737 | 7.03312E-11 | - |
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 255 | 369 | 2.9E-7 | IPR004274 |
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 255 | 369 | 2.9E-7 | IPR004274 |
| Pfam | PF00035 | Double-stranded RNA binding motif | 675 | 737 | 1.7E-7 | IPR014720 |
| Pfam | PF00035 | Double-stranded RNA binding motif | 675 | 737 | 1.7E-7 | IPR014720 |
| SUPERFAMILY | SSF56784 | HAD-like | 138 | 395 | 1.44E-19 | IPR036412 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 675 | 737 | 6.62E-13 | - |
| SUPERFAMILY | SSF56784 | HAD-like | 138 | 395 | 1.44E-19 | IPR036412 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 675 | 737 | 6.62E-13 | - |
| Gene3D | G3DSA:3.30.160.20 | - | 671 | 743 | 1.6E-11 | - |
| Gene3D | G3DSA:3.40.50.1000 | - | 138 | 411 | 1.4E-25 | IPR023214 |
| Gene3D | G3DSA:3.30.160.20 | - | 671 | 743 | 1.6E-11 | - |
| Gene3D | G3DSA:3.40.50.1000 | - | 138 | 411 | 1.4E-25 | IPR023214 |
| SMART | SM00577 | forpap2 | 203 | 379 | 1.3E-10 | IPR004274 |
| SMART | SM00577 | forpap2 | 203 | 379 | 1.3E-10 | IPR004274 |
| SMART | SM00358 | DRBM_3 | 674 | 738 | 1.4E-9 | IPR014720 |
| SMART | SM00358 | DRBM_3 | 674 | 738 | 1.4E-9 | IPR014720 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 144 | 395 | 14.977736 | IPR004274 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 144 | 395 | 14.977736 | IPR004274 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 673 | 739 | 15.436892 | IPR014720 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 673 | 739 | 15.436892 | IPR014720 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 822 | 845 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 807 | 821 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 767 | 785 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 789 | 806 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 789 | 806 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 822 | 845 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 807 | 821 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 767 | 845 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 767 | 785 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 767 | 845 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01270.1 | carboxyl-terminal domain (ctd) phosphatase-like 2. Encodes CPL2, a carboxyl-terminal domain (CTD) phosphatase that dephosphorylates CTD Ser5-PO4 of the RNA polymerase II complex. Regulates plant growth, stress and auxin responses. | 0 |
| RefSeq | XP_018825887.1 | RNA polymerase II C-terminal domain phosphatase-like 2 isoform X1 [Juglans regia] | 0 |
| Q5YDB5 | RNA polymerase II C-terminal domain phosphatase-like 2 OS=Arabidopsis thaliana OX=3702 GN=CPL2 PE=1 SV=3 | 0 | |
| TrEMBL | A0A2I4F2L2 | protein-serine/threonine phosphatase OS=Juglans regia OX=51240 GN=LOC108994920 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology