Basic Information
Locus ID:
Lb2G10028
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Cell division cycle 20.2, cofactor of APC complex-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 86258318 | 86258859 | - | Lb2G10028 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.12 | 16,208.84 Da | 34.39 | 75.63 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 63 | 103 | 3.5E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 17 | 50 | 2.7E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 63 | 103 | 3.5E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 117 | 150 | 0.21 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 17 | 50 | 2.7E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 117 | 150 | 0.21 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 2 | 151 | 1.1E-28 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 2 | 151 | 1.1E-28 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 1 | 151 | 2.0E-44 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 1 | 151 | 2.0E-44 | IPR015943 |
| SMART | SM00320 | WD40_4 | 115 | 148 | 18.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 61 | 103 | 2.7E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 13 | 52 | 2.8E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 115 | 148 | 18.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 13 | 52 | 2.8E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 61 | 103 | 2.7E-6 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 20 | 61 | 9.505904 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 20 | 61 | 9.505904 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 68 | 112 | 8.737287 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 68 | 112 | 8.737287 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 90 | 104 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 90 | 104 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33260.1 | Transducin family protein / WD-40 repeat family protein. putative cdc20 protein (CDC20.2) | 0 |
| RefSeq | XP_021762135.1 | cell division cycle 20.2, cofactor of APC complex-like [Chenopodium quinoa] | 0 |
| Q9S7I8 | Cell division cycle 20.2, cofactor of APC complex OS=Arabidopsis thaliana OX=3702 GN=CDC20-2 PE=1 SV=1 | 0 | |
| TrEMBL | M4F7F1 | ANAPC4_WD40 domain-containing protein OS=Brassica rapa subsp. pekinensis OX=51351 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology