Basic Information
Locus ID:
Lb2G10002
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Belongs to the ATG8 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 84919524 | 84921916 | - | Lb2G10002 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.78 | 14,043.15 Da | 38.89 | 100.57 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16128 | Ubl_ATG8 | 12 | 114 | 1.26068E-70 | - |
| CDD | cd16128 | Ubl_ATG8 | 12 | 114 | 1.26068E-70 | - |
| Pfam | PF02991 | Autophagy protein Atg8 ubiquitin like | 14 | 117 | 1.7E-50 | IPR004241 |
| Pfam | PF02991 | Autophagy protein Atg8 ubiquitin like | 14 | 117 | 1.7E-50 | IPR004241 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 4 | 117 | 1.09E-43 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 4 | 117 | 1.09E-43 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 117 | 8.8E-58 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 117 | 8.8E-58 | - |
KEGG Pathway
Pathway:
ko04068 (FoxO signaling pathway)
map04068 (FoxO signaling pathway)
ko04136 (Autophagy - other)
map04136 (Autophagy - other)
ko04137 (Mitophagy - animal)
map04137 (Mitophagy - animal)
ko04138 (Autophagy - yeast)
map04138 (Autophagy - yeast)
ko04139 (Mitophagy - yeast)
map04139 (Mitophagy - yeast)
ko04140 (Autophagy - animal)
map04140 (Autophagy - animal)
ko04212 (Longevity regulating pathway - worm)
map04212 (Longevity regulating pathway - worm)
ko04371 (Apelin signaling pathway)
map04371 (Apelin signaling pathway)
map04621 (NOD-like receptor signaling pathway)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G16520.1 | Ubiquitin-like superfamily protein. | 0 |
| RefSeq | XP_012828246.1 | PREDICTED: autophagy-related protein 8f [Erythranthe guttata] | 0 |
| Q8VYK7 | Autophagy-related protein 8f OS=Arabidopsis thaliana OX=3702 GN=ATG8F PE=1 SV=1 | 0 | |
| TrEMBL | A0A843WP13 | Autophagy-related protein OS=Colocasia esculenta OX=4460 GN=Taro_037219 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology