Basic Information
Locus ID:
Lb2G09988
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Mitogen-activated protein kinase-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 84142569 | 84153863 | + | Lb2G09988 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.75 | 105,598.80 Da | 40.98 | 82.56 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 568 | 601 | 0.099 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 568 | 601 | 0.099 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 121 | 160 | 1.2E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 121 | 160 | 1.2E-8 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 86 | 735 | 1.65E-44 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 87 | 419 | 6.71E-33 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 87 | 419 | 6.71E-33 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 86 | 735 | 1.65E-44 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 241 | 425 | 3.0E-11 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 608 | 786 | 4.3E-16 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 241 | 425 | 3.0E-11 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 608 | 786 | 4.3E-16 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 41 | 221 | 1.2E-26 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 431 | 607 | 9.2E-18 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 431 | 607 | 9.2E-18 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 41 | 221 | 1.2E-26 | IPR015943 |
| SMART | SM00320 | WD40_4 | 565 | 603 | 0.0012 | IPR001680 |
| SMART | SM00320 | WD40_4 | 695 | 734 | 3.3E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 163 | 203 | 4.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 319 | 356 | 150.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 119 | 160 | 1.1E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 456 | 494 | 6.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 73 | 116 | 59.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 651 | 692 | 190.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 251 | 288 | 310.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 362 | 418 | 0.93 | IPR001680 |
| SMART | SM00320 | WD40_4 | 251 | 288 | 310.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 695 | 734 | 3.3E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 163 | 203 | 4.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 565 | 603 | 0.0012 | IPR001680 |
| SMART | SM00320 | WD40_4 | 119 | 160 | 1.1E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 456 | 494 | 6.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 319 | 356 | 150.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 520 | 561 | 3.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 362 | 418 | 0.93 | IPR001680 |
| SMART | SM00320 | WD40_4 | 520 | 561 | 3.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 651 | 692 | 190.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 73 | 116 | 59.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 702 | 743 | 10.742378 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 702 | 735 | 8.808332 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 702 | 743 | 10.742378 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 126 | 169 | 8.536777 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 702 | 735 | 8.808332 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 126 | 169 | 8.536777 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 147 | 161 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 147 | 161 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 18 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 18 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 28 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 28 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G09080.4 | - | 0 |
| RefSeq | XP_048319317.1 | mitogen-activated protein kinase-binding protein 1 isoform X2 [Ziziphus jujuba var. spinosa] | 0 |
| Q8HXL3 | WD repeat-containing protein 62 OS=Sus scrofa OX=9823 GN=WDR62 PE=3 SV=1 | 0 | |
| TrEMBL | A0A6P4B4V7 | mitogen-activated protein kinase-binding protein 1 isoform X3 OS=Ziziphus jujuba OX=326968 GN=LOC107430725 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg14799 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30285450 |
| Apiaceae | Apium graveolens | 1 | Ag5G02363 |
| Asteraceae | Flaveria trinervia | 1 | Ftri3G25194 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G09080.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10022253m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g07530.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB07g058390.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G1051 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl08G1076, Cgl08G1077 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.1010s00004.v1.0 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.1069 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00006461 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G09988 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_1_RagTag.1767 |
| Salicaceae | Populus euphratica | 1 | populus_peu11401 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132630690 |
| Solanaceae | Solanum chilense | 1 | SOLCI000172200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107029641 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_4371 |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G1795 |