Basic Information
Locus ID:
Lb2G09824
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 76693909 | 76707973 | + | Lb2G09824 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.62 | 139,712.75 Da | 49.66 | 80.94 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04301 | NAT_SF | 961 | 1022 | 0.00266237 | - |
| CDD | cd04301 | NAT_SF | 961 | 1022 | 0.00266237 | - |
| Pfam | PF16135 | Tify domain binding domain | 389 | 442 | 1.9E-9 | IPR032308 |
| Pfam | PF16135 | Tify domain binding domain | 645 | 694 | 1.4E-14 | IPR032308 |
| Pfam | PF16135 | Tify domain binding domain | 389 | 442 | 1.9E-9 | IPR032308 |
| Pfam | PF16135 | Tify domain binding domain | 645 | 694 | 1.4E-14 | IPR032308 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 694 | 752 | 8.43E-13 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 792 | 853 | 1.05E-8 | IPR011011 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 955 | 1046 | 3.96E-11 | IPR016181 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 694 | 752 | 8.43E-13 | IPR011011 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 955 | 1046 | 3.96E-11 | IPR016181 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 792 | 853 | 1.05E-8 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 792 | 856 | 4.9E-12 | IPR013083 |
| Gene3D | G3DSA:3.40.630.30 | - | 943 | 1056 | 2.6E-9 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 696 | 770 | 1.6E-14 | IPR013083 |
| Gene3D | G3DSA:3.40.630.30 | - | 943 | 1056 | 2.6E-9 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 696 | 770 | 1.6E-14 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 792 | 856 | 4.9E-12 | IPR013083 |
| SMART | SM00249 | PHD_3 | 797 | 854 | 3.3E-4 | IPR001965 |
| SMART | SM00249 | PHD_3 | 711 | 752 | 4.2E-10 | IPR001965 |
| SMART | SM00249 | PHD_3 | 797 | 854 | 3.3E-4 | IPR001965 |
| SMART | SM00249 | PHD_3 | 711 | 752 | 4.2E-10 | IPR001965 |
| ProSiteProfiles | PS51186 | Gcn5-related N-acetyltransferase (GNAT) domain profile. | 911 | 1065 | 9.825237 | IPR000182 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 795 | 855 | 8.626699 | IPR019787 |
| ProSiteProfiles | PS51186 | Gcn5-related N-acetyltransferase (GNAT) domain profile. | 911 | 1065 | 9.825237 | IPR000182 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 795 | 855 | 8.626699 | IPR019787 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 709 | 754 | 10.1842 | IPR019787 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 709 | 754 | 10.1842 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 712 | 751 | - | IPR019786 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 712 | 751 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 96 | 149 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 170 | 194 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1082 | 1177 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 96 | 114 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 96 | 149 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 170 | 194 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1092 | 1177 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 170 | 204 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 502 | 523 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 96 | 114 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1082 | 1177 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 170 | 204 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 502 | 523 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 569 | 599 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 569 | 599 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1092 | 1177 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G36720.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain. | 0 |
| RefSeq | XP_015056110.1 | uncharacterized protein LOC107002562 [Solanum pennellii] | 0 |
| O88491 | Histone-lysine N-methyltransferase, H3 lysine-36 specific OS=Mus musculus OX=10090 GN=Nsd1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2BL61 | PHD-type domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_007610 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology