Basic Information
Locus ID:
Lb2G09316
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
CHY zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 53737262 | 53747632 | + | Lb2G09316 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.58 | 36,318.16 Da | 56.44 | 74.35 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 185 | 227 | 5.49E-15 | IPR037275 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 185 | 227 | 5.49E-15 | IPR037275 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 168 | 233 | 22.944977 | IPR017921 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 168 | 233 | 22.944977 | IPR017921 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 123 | 155 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 123 | 155 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G18650.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 0 |
| RefSeq | XP_010321192.1 | E3 ubiquitin-protein ligase MIEL1 isoform X1 [Solanum lycopersicum] | 0 |
| Q8VZK0 | E3 ubiquitin-protein ligase MIEL1 OS=Arabidopsis thaliana OX=3702 GN=MIEL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803MUD8 | E3 ubiquitin-protein ligase MIEL1-like OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||