Basic Information
Locus ID:
Lb2G09300
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
E3 ubiquitin-protein ligase RHA1B-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 53209637 | 53212612 | - | Lb2G09300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.52 | 56,081.97 Da | 60.15 | 87.91 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 397 | 441 | 3.6E-10 | IPR001841 |
| Pfam | PF14111 | Domain of unknown function (DUF4283) | 26 | 106 | 1.4E-6 | IPR025558 |
| Pfam | PF13639 | Ring finger domain | 397 | 441 | 3.6E-10 | IPR001841 |
| Pfam | PF14111 | Domain of unknown function (DUF4283) | 26 | 106 | 1.4E-6 | IPR025558 |
| SUPERFAMILY | SSF57850 | RING/U-box | 397 | 447 | 4.48E-18 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 397 | 447 | 4.48E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 377 | 448 | 1.0E-16 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 377 | 448 | 1.0E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 398 | 440 | 2.4E-5 | IPR001841 |
| SMART | SM00184 | ring_2 | 398 | 440 | 2.4E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 398 | 441 | 12.386007 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 398 | 441 | 12.386007 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 192 | 225 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 192 | 225 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61460.1 | brassinosteroid-responsive RING-H2. Encodes a novel ring finger protein and forms an N-terminal hydrophobic domain and a C-terminal RING-H2 signature. Expression is down regulated by brassinolide. | 0 |
| RefSeq | XP_034704192.1 | E3 ubiquitin-protein ligase RHA1B-like [Vitis riparia] | 0 |
| Q9XF92 | Brassinosteroid-responsive RING protein 1 OS=Arabidopsis thaliana OX=3702 GN=BRH1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A438E640 | E3 ubiquitin-protein ligase RHA1B OS=Vitis vinifera OX=29760 GN=RHA1B_4 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology