Basic Information
Locus ID:
Lb2G09235
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Short Name:
PDC3
Description:
Belongs to the TPP enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 51271032 | 51273936 | + | Lb2G09235 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.75 | 52,109.26 Da | 32.44 | 88.81 | 0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02005 | TPP_PDC_IPDC | 280 | 462 | 3.29901E-86 | - |
| CDD | cd02005 | TPP_PDC_IPDC | 280 | 462 | 3.29901E-86 | - |
| Pfam | PF00205 | Thiamine pyrophosphate enzyme, central domain | 115 | 232 | 1.0E-22 | IPR012000 |
| Pfam | PF00205 | Thiamine pyrophosphate enzyme, central domain | 115 | 232 | 1.0E-22 | IPR012000 |
| Pfam | PF02775 | Thiamine pyrophosphate enzyme, C-terminal TPP binding domain | 325 | 450 | 2.6E-14 | IPR011766 |
| Pfam | PF02775 | Thiamine pyrophosphate enzyme, C-terminal TPP binding domain | 325 | 450 | 2.6E-14 | IPR011766 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 39 | 99 | 6.11E-6 | IPR029061 |
| SUPERFAMILY | SSF52467 | DHS-like NAD/FAD-binding domain | 110 | 257 | 2.45E-34 | IPR029035 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 280 | 473 | 1.79E-40 | IPR029061 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 280 | 473 | 1.79E-40 | IPR029061 |
| SUPERFAMILY | SSF52467 | DHS-like NAD/FAD-binding domain | 110 | 257 | 2.45E-34 | IPR029035 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 39 | 99 | 6.11E-6 | IPR029061 |
| Gene3D | G3DSA:3.40.50.970 | - | 273 | 464 | 8.3E-55 | - |
| Gene3D | G3DSA:3.40.50.1220 | - | 105 | 267 | 1.4E-44 | - |
| Gene3D | G3DSA:3.40.50.970 | - | 20 | 90 | 3.9E-8 | - |
| Gene3D | G3DSA:3.40.50.970 | - | 273 | 464 | 8.3E-55 | - |
| Gene3D | G3DSA:3.40.50.1220 | - | 105 | 267 | 1.4E-44 | - |
| Gene3D | G3DSA:3.40.50.970 | - | 20 | 90 | 3.9E-8 | - |
Gene Ontology
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G54960.1 | pyruvate decarboxylase-2. pyruvate decarboxylase-2 | 0 |
| RefSeq | XP_028769722.1 | LOW QUALITY PROTEIN: pyruvate decarboxylase 2-like [Prosopis alba] | 0 |
| A2XFI3 | Pyruvate decarboxylase 2 OS=Oryza sativa subsp. indica OX=39946 GN=PDC2 PE=2 SV=2 | 0 | |
| TrEMBL | A0A151RVV4 | pyruvate decarboxylase OS=Cajanus cajan OX=3821 GN=KK1_031692 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology