Basic Information
Locus ID:
Lb2G09192
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
von Willebrand factor type A domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 49045109 | 49047220 | + | Lb2G09192 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.15 | 66,780.05 Da | 51.48 | 87.26 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13768 | von Willebrand factor type A domain | 260 | 303 | 0.025 | IPR002035 |
| Pfam | PF14624 | VWA / Hh protein intein-like | 497 | 561 | 5.1E-11 | IPR032838 |
| Pfam | PF00092 | von Willebrand factor type A domain | 165 | 220 | 6.4E-9 | IPR002035 |
| Pfam | PF00092 | von Willebrand factor type A domain | 165 | 220 | 6.4E-9 | IPR002035 |
| Pfam | PF13768 | von Willebrand factor type A domain | 260 | 303 | 0.025 | IPR002035 |
| Pfam | PF14624 | VWA / Hh protein intein-like | 497 | 561 | 5.1E-11 | IPR032838 |
| SUPERFAMILY | SSF53300 | vWA-like | 161 | 318 | 5.63E-21 | IPR036465 |
| SUPERFAMILY | SSF57850 | RING/U-box | 2 | 60 | 1.83E-8 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 2 | 60 | 1.83E-8 | - |
| SUPERFAMILY | SSF53300 | vWA-like | 161 | 318 | 5.63E-21 | IPR036465 |
| Gene3D | G3DSA:3.40.50.410 | von Willebrand factor, type A domain | 244 | 319 | 1.3E-7 | IPR036465 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 3 | 58 | 1.5E-6 | IPR013083 |
| Gene3D | G3DSA:3.40.50.410 | von Willebrand factor, type A domain | 244 | 319 | 1.3E-7 | IPR036465 |
| Gene3D | G3DSA:3.40.50.410 | von Willebrand factor, type A domain | 164 | 234 | 1.9E-13 | IPR036465 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 3 | 58 | 1.5E-6 | IPR013083 |
| Gene3D | G3DSA:3.40.50.410 | von Willebrand factor, type A domain | 164 | 234 | 1.9E-13 | IPR036465 |
| SMART | SM00327 | VWA_4 | 163 | 314 | 1.3E-7 | IPR002035 |
| SMART | SM00184 | ring_2 | 8 | 48 | 0.0027 | IPR001841 |
| SMART | SM00327 | VWA_4 | 163 | 314 | 1.3E-7 | IPR002035 |
| SMART | SM00184 | ring_2 | 8 | 48 | 0.0027 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 8 | 48 | 10.114045 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 8 | 48 | 10.114045 | IPR001841 |
| ProSiteProfiles | PS50234 | VWFA domain profile. | 165 | 216 | 9.442781 | IPR002035 |
| ProSiteProfiles | PS50234 | VWFA domain profile. | 165 | 216 | 9.442781 | IPR002035 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 589 | 610 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 589 | 610 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G54780.1 | Zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_016455803.1 | PREDICTED: uncharacterized protein LOC107779822 isoform X2 [Nicotiana tabacum] | 0 |
| Q9LTA6 | E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana OX=3702 GN=WAV3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2Z7BKS6 | RING-type domain-containing protein (Fragment) OS=Dorcoceras hygrometricum OX=472368 GN=F511_10141 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||