Basic Information
Locus ID:
Lb2G09115
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 44731587 | 44735852 | - | Lb2G09115 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.51 | 100,912.88 Da | 48.15 | 68.03 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 457 | 494 | 6.5E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 500 | 536 | 0.0028 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 367 | 400 | 1.3E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 457 | 494 | 6.5E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 367 | 400 | 1.3E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 500 | 536 | 0.0028 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 364 | 715 | 3.0E-49 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 364 | 715 | 3.0E-49 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 354 | 732 | 4.1E-57 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 354 | 732 | 4.1E-57 | IPR015943 |
| SMART | SM00320 | WD40_4 | 633 | 669 | 25.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 455 | 494 | 3.9E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 670 | 711 | 0.85 | IPR001680 |
| SMART | SM00320 | WD40_4 | 497 | 536 | 2.0E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 362 | 401 | 3.7E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 497 | 536 | 2.0E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 633 | 669 | 25.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 670 | 711 | 0.85 | IPR001680 |
| SMART | SM00320 | WD40_4 | 455 | 494 | 3.9E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 362 | 401 | 3.7E-8 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 462 | 503 | 14.986489 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 462 | 497 | 11.866497 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 503 | 537 | 10.601049 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 369 | 403 | 11.89286 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 369 | 403 | 11.89286 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 503 | 537 | 10.601049 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 462 | 497 | 11.866497 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 503 | 545 | 12.814306 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 369 | 410 | 14.518635 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 503 | 545 | 12.814306 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 369 | 410 | 14.518635 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 462 | 503 | 14.986489 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 388 | 402 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 481 | 495 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 481 | 495 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 388 | 402 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 481 | 495 | 1.9E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 523 | 537 | 1.9E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 388 | 402 | 1.9E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 388 | 402 | 1.9E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 481 | 495 | 1.9E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 523 | 537 | 1.9E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 755 | 869 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 111 | 148 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 755 | 869 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 413 | 430 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 787 | 813 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 755 | 786 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 413 | 439 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 111 | 148 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 814 | 869 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 787 | 813 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 755 | 786 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 413 | 439 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 814 | 869 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 413 | 430 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G37670.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_021854625.1 | uncharacterized protein LOC110793990 [Spinacia oleracea] | 0 |
| Q9XSC3 | WD repeat-containing protein 44 OS=Bos taurus OX=9913 GN=WDR44 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0J8CGL2 | WD_REPEATS_REGION domain-containing protein OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_5g110220 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology