Basic Information
Locus ID:
Lb2G09110
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 44591988 | 44602928 | - | Lb2G09110 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.18 | 151,583.30 Da | 46.45 | 70.38 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 572 | 878 | 6.95705E-39 | - |
| CDD | cd00200 | WD40 | 572 | 878 | 6.95705E-39 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 664 | 701 | 1.0E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 574 | 607 | 2.1E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 664 | 701 | 1.0E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 707 | 743 | 0.0045 | IPR001680 |
| Pfam | PF03732 | Retrotransposon gag protein | 1287 | 1354 | 6.6E-8 | IPR005162 |
| Pfam | PF00400 | WD domain, G-beta repeat | 574 | 607 | 2.1E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 707 | 743 | 0.0045 | IPR001680 |
| Pfam | PF03732 | Retrotransposon gag protein | 1287 | 1354 | 6.6E-8 | IPR005162 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 570 | 881 | 1.83E-52 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 570 | 881 | 1.83E-52 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 560 | 901 | 1.2E-57 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 560 | 901 | 1.2E-57 | IPR015943 |
| SMART | SM00320 | WD40_4 | 569 | 608 | 3.7E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 746 | 784 | 1.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 836 | 878 | 8.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 662 | 701 | 3.9E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 704 | 743 | 2.0E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 704 | 743 | 2.0E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 746 | 784 | 1.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 799 | 835 | 25.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 569 | 608 | 3.7E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 836 | 878 | 8.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 799 | 835 | 25.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 662 | 701 | 3.9E-9 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 710 | 752 | 12.814306 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 710 | 744 | 10.601049 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 576 | 617 | 14.518635 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 669 | 710 | 14.986489 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 576 | 610 | 11.89286 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 669 | 704 | 11.866497 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 576 | 617 | 14.518635 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 576 | 610 | 11.89286 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 669 | 710 | 14.986489 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 710 | 744 | 10.601049 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 669 | 704 | 11.866497 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 710 | 752 | 12.814306 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 688 | 702 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 595 | 609 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 595 | 609 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 688 | 702 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 688 | 702 | 5.8E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 730 | 744 | 5.8E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 595 | 609 | 5.8E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 688 | 702 | 5.8E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 595 | 609 | 5.8E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 730 | 744 | 5.8E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 953 | 979 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 618 | 635 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 922 | 952 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 618 | 647 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 512 | 552 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 922 | 952 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 980 | 1034 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 512 | 552 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 520 | 541 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 980 | 1034 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 922 | 1034 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 520 | 541 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 618 | 635 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 953 | 979 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 263 | 302 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 618 | 647 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 922 | 1034 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 263 | 302 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G37670.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_021750711.1 | WD repeat-containing protein 44-like [Chenopodium quinoa] | 0 |
| Q9XSC3 | WD repeat-containing protein 44 OS=Bos taurus OX=9913 GN=WDR44 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0J8CGL2 | WD_REPEATS_REGION domain-containing protein OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_5g110220 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology