Basic Information
Locus ID:
Lb2G09086
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Contains the following InterPro domains Zinc finger, PHD-type, conserved site (InterPro IPR019786), Zinc finger, PHD-type (InterPro IPR001965), Zinc finger, FYVE PHD-type (InterPro IPR011011), Acyl-CoA N-acyltransferase (InterPro IPR016181), Zinc finger, PHD-finger (InterPro IPR019787)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 42565291 | 42575122 | + | Lb2G09086 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.04 | 94,579.30 Da | 50.20 | 79.16 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15568 | PHD5_NSD | 523 | 560 | 4.66962E-13 | - |
| CDD | cd15568 | PHD5_NSD | 523 | 560 | 4.66962E-13 | - |
| Pfam | PF16135 | Tify domain binding domain | 260 | 311 | 8.3E-12 | IPR032308 |
| Pfam | PF16135 | Tify domain binding domain | 459 | 505 | 3.0E-14 | IPR032308 |
| Pfam | PF16135 | Tify domain binding domain | 459 | 505 | 3.0E-14 | IPR032308 |
| Pfam | PF16135 | Tify domain binding domain | 260 | 311 | 8.3E-12 | IPR032308 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 518 | 566 | 2.47E-13 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 585 | 648 | 5.5E-7 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 585 | 648 | 5.5E-7 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 518 | 566 | 2.47E-13 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 511 | 584 | 3.0E-14 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 511 | 584 | 3.0E-14 | IPR013083 |
| Gene3D | G3DSA:3.40.630.30 | - | 685 | 853 | 1.8E-5 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 585 | 666 | 1.5E-9 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 585 | 666 | 1.5E-9 | IPR013083 |
| Gene3D | G3DSA:3.40.630.30 | - | 685 | 853 | 1.8E-5 | - |
| SMART | SM00249 | PHD_3 | 522 | 563 | 2.4E-8 | IPR001965 |
| SMART | SM00249 | PHD_3 | 592 | 649 | 0.0097 | IPR001965 |
| SMART | SM00249 | PHD_3 | 522 | 563 | 2.4E-8 | IPR001965 |
| SMART | SM00249 | PHD_3 | 592 | 649 | 0.0097 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 520 | 565 | 9.881599 | IPR019787 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 520 | 565 | 9.881599 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 593 | 648 | - | IPR019786 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 593 | 648 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 16 | 46 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 101 | 130 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 16 | 71 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 101 | 130 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 16 | 71 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 16 | 46 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G37520.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain. | 0 |
| RefSeq | XP_034693825.1 | uncharacterized protein LOC117920421 isoform X2 [Vitis riparia] | 0 |
| TrEMBL | A0A5N6RK84 | Increased DNA methylation 1 OS=Carpinus fangiana OX=176857 GN=FH972_017425 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology