Basic Information
Locus ID:
Lb2G08927
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Clathrin interactor EPSIN
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 34839024 | 34858264 | + | Lb2G08927 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.90 | 197,970.80 Da | 43.01 | 69.34 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09272 | RNase_HI_RT_Ty1 | 842 | 925 | 7.89755E-37 | - |
| CDD | cd03571 | ENTH | 966 | 1082 | 1.56419E-62 | - |
| CDD | cd03571 | ENTH | 966 | 1082 | 1.56419E-62 | - |
| CDD | cd09272 | RNase_HI_RT_Ty1 | 842 | 925 | 7.89755E-37 | - |
| Pfam | PF07727 | Reverse transcriptase (RNA-dependent DNA polymerase) | 529 | 755 | 1.5E-66 | IPR013103 |
| Pfam | PF14223 | gag-polypeptide of LTR copia-type | 84 | 165 | 6.5E-10 | - |
| Pfam | PF07727 | Reverse transcriptase (RNA-dependent DNA polymerase) | 529 | 755 | 1.5E-66 | IPR013103 |
| Pfam | PF01417 | ENTH domain | 965 | 1085 | 1.9E-45 | IPR013809 |
| Pfam | PF14223 | gag-polypeptide of LTR copia-type | 84 | 165 | 6.5E-10 | - |
| Pfam | PF01417 | ENTH domain | 965 | 1085 | 1.9E-45 | IPR013809 |
| Pfam | PF14244 | gag-polypeptide of LTR copia-type | 28 | 74 | 2.5E-12 | IPR029472 |
| Pfam | PF14244 | gag-polypeptide of LTR copia-type | 28 | 74 | 2.5E-12 | IPR029472 |
| SUPERFAMILY | SSF57756 | Retrovirus zinc finger-like domains | 264 | 307 | 2.69E-7 | IPR036875 |
| SUPERFAMILY | SSF57756 | Retrovirus zinc finger-like domains | 264 | 307 | 2.69E-7 | IPR036875 |
| SUPERFAMILY | SSF48464 | ENTH/VHS domain | 963 | 1102 | 3.53E-49 | IPR008942 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 530 | 912 | 6.23E-29 | IPR043502 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 530 | 912 | 6.23E-29 | IPR043502 |
| SUPERFAMILY | SSF48464 | ENTH/VHS domain | 963 | 1102 | 3.53E-49 | IPR008942 |
| Gene3D | G3DSA:4.10.60.10 | - | 253 | 312 | 2.0E-6 | - |
| Gene3D | G3DSA:1.25.40.90 | - | 962 | 1103 | 1.7E-59 | IPR008942 |
| Gene3D | G3DSA:4.10.60.10 | - | 253 | 312 | 2.0E-6 | - |
| Gene3D | G3DSA:1.25.40.90 | - | 962 | 1103 | 1.7E-59 | IPR008942 |
| SMART | SM00343 | c2hcfinal6 | 272 | 288 | 0.53 | IPR001878 |
| SMART | SM00343 | c2hcfinal6 | 291 | 307 | 0.016 | IPR001878 |
| SMART | SM00343 | c2hcfinal6 | 291 | 307 | 0.016 | IPR001878 |
| SMART | SM00343 | c2hcfinal6 | 272 | 288 | 0.53 | IPR001878 |
| SMART | SM00273 | enth_2 | 964 | 1090 | 3.0E-58 | IPR013809 |
| SMART | SM00273 | enth_2 | 964 | 1090 | 3.0E-58 | IPR013809 |
| ProSiteProfiles | PS50942 | ENTH domain profile. | 958 | 1090 | 41.483513 | IPR013809 |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 291 | 305 | 8.729682 | IPR001878 |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 291 | 305 | 8.729682 | IPR001878 |
| ProSiteProfiles | PS50942 | ENTH domain profile. | 958 | 1090 | 41.483513 | IPR013809 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1383 | 1408 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1246 | 1292 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1116 | 1229 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1090 | 1318 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1383 | 1408 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1116 | 1229 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1332 | 1408 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1353 | 1371 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1090 | 1318 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1246 | 1292 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1332 | 1408 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1353 | 1371 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1469 | 1491 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1469 | 1491 | - | - |
| Coils | Coil | Coil | 1076 | 1096 | - | - |
| Coils | Coil | Coil | 1076 | 1096 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G43160.1 | ENTH/VHS family protein. | 0 |
| RefSeq | XP_048333150.1 | clathrin interactor EPSIN 2 [Ziziphus jujuba var. spinosa] | 0 |
| Q67YI9 | Clathrin interactor EPSIN 2 OS=Arabidopsis thaliana OX=3702 GN=EPSIN2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9QVT9 | ENTH domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_140740 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg10980, jg5902 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_15486 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah002354 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g112690 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg32236, Sbi_jg57153 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg24894 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00027432 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl53545, Sgl58807 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000004184, gene:ENSEOMG00000010139 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.4AG0014650, CQ.Regalona.r1.4BG0013020 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30242950 |
| Apiaceae | Apium graveolens | 2 | Ag5G02861, Ag9G00737 |
| Arecaceae | Cocos nucifera | 1 | COCNU_08G012080 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103708455, gene-LOC103719843 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.2040.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri11G22815, Ftri12G09293, Ftri2G33971 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G43160.3, AT3G59290.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10001304m.g.v1.0, Thhalv10005771m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp4g25290.v2.2, Sp5g03810.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB01g002970.2N, BniB06g002060.2N, BniB08g028100.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G1422 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G1516 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno13g04210 |
| Hydrocharitaceae | Thalassia testudinum | 4 | gene.Thate03g06550, gene.Thate04g01530, gene.Thate04g12580 ... |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.107 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00021421 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G08927 |
| Poaceae | Echinochloa crus-galli | 3 | AH07.3885, BH07.3680, CH07.3753 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0149730, gene-QOZ80_2BG0204500 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0627470.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_026783 |
| Poaceae | Oryza coarctata | 2 | Oco03G024750, Oco04G025280 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g56270.1 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0206090, Pt_Chr0206110 |
| Poaceae | Sporobolus alterniflorus | 7 | Chr06G000090, Chr09G016960, Chr0G008970, Chr0G012780 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G679100 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC6AG055970 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G375400.1, TraesCS6B02G413000.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb191930_P002 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-55952, nbis-gene-57888, nbis-gene-8378 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g14661, Zma_g17371 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.2677, evm.TU.LG08.302 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc10g07330 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_3_RagTag.1453, evm.TU.Scaffold_6_RagTag.1061 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-15596, nbisL1-mrna-1761 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-1552, nbisL1-mrna-953 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-2678, nbisL1-mrna-917 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000011l.673, evm.TU.utg000019l.371 |
| Rhizophoraceae | Kandelia obovata | 3 | Maker00001688, Maker00006903, Maker00007752 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-12292, nbisL1-mrna-13625 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-12814, nbisL1-mrna-4184 |
| Salicaceae | Populus euphratica | 2 | populus_peu27040, populus_peu31015 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132604444, gene-LOC132609130 |
| Solanaceae | Solanum chilense | 1 | SOLCI005610000 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107007157, gene-LOC107029798 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.24536_chr08_- |
| Tamaricaceae | Tamarix chinensis | 4 | TC05G2490, TC06G0664, TC06G0665, TC06G0666 |
| Zosteraceae | Zostera marina | 2 | Zosma05g29440.v3.1, Zosma06g19330.v3.1 |