halophFGD

Basic Information

Locus ID: Lb2G08583

Species & Taxonomic ID: Limonium bicolor & 293754

Genome Assembly: GCA_023374045.1

Description: Endochitinase-like

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr02	19664021	19665415	-	Lb2G08583

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.84	34,799.33 Da	37.97	53.96	-0.33

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00325	chitinase_GH19	92	321	5.78895E-114	-
CDD	cd06921	ChtBD1_GH19_hevein	30	69	5.62352E-19	-
CDD	cd06921	ChtBD1_GH19_hevein	30	69	5.62352E-19	-
CDD	cd00325	chitinase_GH19	92	321	5.78895E-114	-
Pfam	PF00182	Chitinase class I	91	321	3.2E-128	IPR000726
Pfam	PF00187	Chitin recognition protein	31	68	5.3E-14	IPR001002
Pfam	PF00182	Chitinase class I	91	321	3.2E-128	IPR000726
Pfam	PF00187	Chitin recognition protein	31	68	5.3E-14	IPR001002
SUPERFAMILY	SSF57016	Plant lectins/antimicrobial peptides	31	79	4.06E-14	IPR036861
SUPERFAMILY	SSF53955	Lysozyme-like	87	327	2.36E-108	IPR023346
SUPERFAMILY	SSF57016	Plant lectins/antimicrobial peptides	31	79	4.06E-14	IPR036861
SUPERFAMILY	SSF53955	Lysozyme-like	87	327	2.36E-108	IPR023346
Gene3D	G3DSA:3.30.60.10	-	29	71	3.1E-17	IPR036861
Gene3D	G3DSA:3.30.20.10	Endochitinase, domain 2	174	230	1.0E-119	-
Gene3D	G3DSA:3.30.20.10	Endochitinase, domain 2	174	230	1.0E-119	-
Gene3D	G3DSA:1.10.530.10	-	96	327	1.0E-119	-
Gene3D	G3DSA:3.30.60.10	-	29	71	3.1E-17	IPR036861
Gene3D	G3DSA:1.10.530.10	-	96	327	1.0E-119	-
SMART	SM00270	ChitinBD_3	31	68	1.4E-16	IPR001002
SMART	SM00270	ChitinBD_3	31	68	1.4E-16	IPR001002
PIRSF	PIRSF001060	Endochitinase	5	328	5.7E-126	IPR016283
PIRSF	PIRSF001060	Endochitinase	5	328	5.7E-126	IPR016283
ProSiteProfiles	PS50941	Chitin-binding type-1 domain profile.	29	70	10.965391	IPR001002
ProSiteProfiles	PS50941	Chitin-binding type-1 domain profile.	29	70	10.965391	IPR001002
ProSitePatterns	PS00026	Chitin recognition or binding domain signature.	41	60	-	IPR018371
ProSitePatterns	PS00026	Chitin recognition or binding domain signature.	41	60	-	IPR018371
ProSitePatterns	PS00774	Chitinases family 19 signature 2.	234	244	-	IPR000726
ProSitePatterns	PS00774	Chitinases family 19 signature 2.	234	244	-	IPR000726
ProSitePatterns	PS00773	Chitinases family 19 signature 1.	109	131	-	IPR000726
ProSitePatterns	PS00773	Chitinases family 19 signature 1.	109	131	-	IPR000726
PRINTS	PR00451	Chitin-binding domain signature	54	61	7.7E-6	IPR001002
PRINTS	PR00451	Chitin-binding domain signature	39	47	7.7E-6	IPR001002
PRINTS	PR00451	Chitin-binding domain signature	39	47	7.7E-6	IPR001002
PRINTS	PR00451	Chitin-binding domain signature	47	54	7.7E-6	IPR001002
PRINTS	PR00451	Chitin-binding domain signature	54	61	7.7E-6	IPR001002
PRINTS	PR00451	Chitin-binding domain signature	47	54	7.7E-6	IPR001002

Gene Ontology

Biological Process:

GO:0005975 (carbohydrate metabolic process) GO:0006032 (chitin catabolic process) GO:0016998 (cell wall macromolecule catabolic process)

Molecular Function:

GO:0004568 (chitinase activity) GO:0008061 (chitin binding)

KEGG Pathway

KO Term:

K20547 (basic endochitinase B [EC:3.2.1.14])

Pathway:

ko00520 (Amino sugar and nucleotide sugar metabolism) map00520 (Amino sugar and nucleotide sugar metabolism) ko01100 (Metabolic pathways) map01100 (Metabolic pathways) ko04016 (MAPK signaling pathway - plant) map04016 (MAPK signaling pathway - plant)

Reaction:

R01206 (Chitin + H2O <=> N-Acetyl-D-glucosamine + Chitin) R02334 (Chitin + H2O <=> Chitobiose + Chitin)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G12500.1	basic chitinase. encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses.
RefSeq	XP_017235514.1	PREDICTED: basic endochitinase-like [Daucus carota subsp. sativus]
Swiss-Prot	P36907	Endochitinase OS=Pisum sativum OX=3888 PE=2 SV=1
TrEMBL	Q1W6C5	Class Ib chitinase OS=Limonium bicolor OX=293754 PE=2 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Aizoaceae	Mesembryanthemum crystallinum	8	gene_15645, gene_15646, gene_17621, gene_2705, gene_2707 ... gene_2708, gene_2711, gene_2713
Amaranthaceae	Atriplex hortensis	4	Ah019453, Ah019459, Ah019466, Ah023701
Amaranthaceae	Beta vulgaris	4	BVRB_1g007720, BVRB_3g057620, BVRB_3g057660, BVRB_3g057670
Amaranthaceae	Salicornia bigelovii	3	Sbi_jg38229, Sbi_jg6362, Sbi_jg6363
Amaranthaceae	Salicornia europaea	1	Seu_jg15490
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00001031, GOSA_00006345
Amaranthaceae	Suaeda glauca	3	Sgl10582, Sgl15822, Sgl15833
Amaranthaceae	Chenopodium album	9	gene:ENSEOMG00000010858, gene:ENSEOMG00000015497 ... gene:ENSEOMG00000031266, gene:ENSEOMG00000031819, gene:ENSEOMG00000035924, gene:ENSEOMG00000043688, gene:ENSEOMG00000046275, gene:ENSEOMG00000046909, gene:ENSEOMG00000050355
Amaranthaceae	Chenopodium quinoa	6	CQ.Regalona.r1.1AG0010570, CQ.Regalona.r1.1BG0015280 ... CQ.Regalona.r1.1BG0015290, CQ.Regalona.r1.3AG0010210, CQ.Regalona.r1.3BG0010360, CQ.Regalona.r1.3BG0010370
Anacardiaceae	Pistacia vera	9	pistato.v30007230, pistato.v30106180, pistato.v30109140 ... pistato.v30210750, pistato.v30210760, pistato.v30211920, pistato.v30211930, pistato.v30292310, pistato.v30293550
Apiaceae	Apium graveolens	5	Ag10G01110, Ag10G01112, Ag11G04446, Ag2G01854, Ag9G02370
Arecaceae	Cocos nucifera	3	COCNU_01G022440, COCNU_07G014740, scaffold006850G000050
Arecaceae	Phoenix dactylifera	5	gene-LOC103714742, gene-LOC103723070, gene-LOC103723078 ... gene-LOC120104412, gene-LOC120108798
Asparagaceae	Asparagus officinalis	1	AsparagusV1_07.1170.V1.1
Asteraceae	Flaveria trinervia	1	Ftri18G13318
Brassicaceae	Arabidopsis thaliana	3	AT1G02360.1, AT3G12500.1, AT4G01700.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10008465m.g.v1.0, Thhalv10021149m.g.v1.0 ... Thhalv10028870m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp3g10630.v2.2, Sp6g01590.v2.2
Brassicaceae	Brassica nigra	10	BniB01g052510.2N, BniB01g052550.2N, BniB03g037820.2N ... BniB07g025940.2N, BniB07g025960.2N, BniB07g026080.2N, BniB07g026090.2N, BniB07g056330.2N, BniB08g033280.2N, BniB08g044110.2N
Casuarinaceae	Casuarina equisetifolia	7	Ceq06G0552, Ceq07G1841, Ceq07G1845, Ceq09G0406, Ceq09G0408 ... Ceq09G0409, Ceq09G0410
Casuarinaceae	Casuarina glauca	10	Cgl01G1254, Cgl06G0572, Cgl07G2004, Cgl07G2017, Cgl07G2019 ... Cgl07G2021, Cgl09G0441, Cgl09G0443, Cgl09G0444, Cgl09G0445
Cymodoceaceae	Cymodocea nodosa	4	gene.Cymno03g04490, gene.Cymno03g04500, gene.Cymno03g04510 ... gene.Cymno04g03510
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate01g31330, gene.Thate06g23960
Nitrariaceae	Nitraria sibirica	11	evm.TU.LG02.2849, evm.TU.LG02.2850, evm.TU.LG02.2851 ... evm.TU.LG04.552, evm.TU.LG08.384, evm.TU.LG08.386, evm.TU.LG08.387, evm.TU.LG08.388, evm.TU.LG08.389, evm.TU.LG08.391, evm.TU.LG08.657
Plantaginaceae	Plantago ovata	1	Pov_00016542
Plumbaginaceae	Limonium bicolor	4	Lb2G08583, Lb2G08585, Lb6G31372, Lb6G31380
Poaceae	Echinochloa crus-galli	25	AH01.3043, AH01.5204, AH02.1339, AH05.811, AH05.812 ... AH05.815, AH06.3027, AH06.3028, BH01.5004, BH01.5006, BH02.1387, BH04.471, BH05.2637, BH06.2812, CH01.3627, CH01.3628, CH01.5605, CH01.5606, CH02.1499, CH04.465, CH05.1108, CH05.2740, Contig181.197, Contig181.198, Contig181.200
Poaceae	Eleusine coracana subsp. coracana	16	gene-QOZ80_1AG0013510, gene-QOZ80_1BG0062250 ... gene-QOZ80_2AG0115360, gene-QOZ80_2AG0115370, gene-QOZ80_2BG0169150, gene-QOZ80_2BG0169160, gene-QOZ80_3AG0232650, gene-QOZ80_5AG0373910, gene-QOZ80_5AG0373920, gene-QOZ80_5AG0374010, gene-QOZ80_5BG0422250, gene-QOZ80_5BG0422300, gene-QOZ80_5BG0422350, gene-QOZ80_5BG0453810, gene-QOZ80_6AG0551310, gene-QOZ80_6BG0504890
Poaceae	Hordeum vulgare	11	HORVU.MOREX.r3.1HG0018250.1, HORVU.MOREX.r3.1HG0054950.3 ... HORVU.MOREX.r3.1HG0063630.1.CDS1, HORVU.MOREX.r3.1HG0090110.1.CDS1, HORVU.MOREX.r3.2HG0217120.1.CDS1, HORVU.MOREX.r3.3HG0244120.1, HORVU.MOREX.r3.3HG0281620.1.CDS1, HORVU.MOREX.r3.5HG0513420.1.CDS1, HORVU.MOREX.r3.7HG0742440.1, HORVU.MOREX.r3.7HG0751740.1.CDS1, HORVU.MOREX.r3.7HG0751750.1.CDS1
Poaceae	Lolium multiflorum	11	gene-QYE76_004819, gene-QYE76_009389, gene-QYE76_012337 ... gene-QYE76_012375, gene-QYE76_012437, gene-QYE76_012442, gene-QYE76_013393, gene-QYE76_013394, gene-QYE76_022431, gene-QYE76_052627, gene-QYE76_054697
Poaceae	Oryza coarctata	8	Oco02G008630, Oco05G016060, Oco06G002010, Oco09G009390 ... Oco09G009400, Oco10G001890, Oco12G017810, Oco20G009100
Poaceae	Oryza sativa	11	LOC_Os01g18400.1, LOC_Os03g04060.1, LOC_Os03g30470.1 ... LOC_Os05g04690.1, LOC_Os05g33130.1, LOC_Os05g33140.1, LOC_Os05g33150.1, LOC_Os06g51050.1, LOC_Os06g51060.1, LOC_Os10g39680.1, LOC_Os10g39700.1
Poaceae	Paspalum vaginatum	10	gene-BS78_01G298100, gene-BS78_01G298200, gene-BS78_K261500 ... gene-BS78_01G491900, gene-BS78_03G126600, gene-BS78_08G163400, gene-BS78_09G036900, gene-BS78_09G246200, gene-BS78_10G262100, gene-BS78_10G262300
Poaceae	Puccinellia tenuiflora	5	Pt_Chr0106627, Pt_Chr0500477, Pt_Chr0503085, Pt_Chr0505170 ... Pt_Chr0600512
Poaceae	Sporobolus alterniflorus	14	Chr03G006660, Chr04G005200, Chr06G028490, Chr07G006360 ... Chr08G007110, Chr09G004040, Chr09G004050, Chr13G020930, Chr13G020940, Chr15G019730, Chr18G001450, Chr18G008620, Chr22G008620, Chr22G008970
Poaceae	Thinopyrum elongatum	20	Tel1E01G163100, Tel1E01G350800, Tel1E01G351000 ... Tel1E01G415500, Tel2E01G091000, Tel2E01G1042200, Tel2E01G1043400, Tel2E01G1043700, Tel2E01G1044700, Tel2E01G1044900, Tel2E01G1045200, Tel2E01G266500, Tel3E01G239900, Tel3E01G434000, Tel5E01G632200, Tel6E01G041400, Tel7E01G954500, Tel7E01G954600, Tel7E01G954700, Tel7E01G954800
Poaceae	Triticum dicoccoides	25	gene_TRIDC1AG011680, gene_TRIDC1AG030790 ... gene_TRIDC1AG037510, gene_TRIDC1BG014450, gene_TRIDC1BG036270, gene_TRIDC1BG042570, gene_TRIDC1BG042590, gene_TRIDC1BG042630, gene_TRIDC2AG003580, gene_TRIDC2AG081890, gene_TRIDC2AG081950, gene_TRIDC2AG082070, gene_TRIDC2BG004140, gene_TRIDC2BG091110, gene_TRIDC3AG017040, gene_TRIDC3AG038900, gene_TRIDC3BG022650, gene_TRIDC3BG044040, gene_TRIDC5AG058940, gene_TRIDC5AG058950, gene_TRIDC5BG062110, gene_TRIDC5BG063090, gene_TRIDC7AG076270, gene_TRIDC7AG076680, gene_TRIDC7BG073080
Poaceae	Triticum aestivum	46	TraesCS1A02G082400.1, TraesCS1A02G203600.1 ... TraesCS1A02G203700.1, TraesCS1A02G250000.1.cds1, TraesCS1B02G100000.1, TraesCS1B02G260600.1.cds1, TraesCS1B02G260700.1.cds1, TraesCS1D02G207000.1, TraesCS1D02G207100.3, TraesCS1D02G249600.1.cds1, TraesCS2A02G033600.1, TraesCS2A02G558200.1, TraesCS2B02G047300.1, TraesCS2B02G622200.1.cds1, TraesCS2D02G033100.1, TraesCS2D02G571400.1.cds1, TraesCS3A02G260100.1.cds1, TraesCS3A02G260200.1.cds1, TraesCS3A02G312500.1, TraesCS3B02G159700.1, TraesCS3B02G293200.1.cds1, TraesCS3D02G141900.1, TraesCS3D02G260300.1.cds1, TraesCS3D02G260500.1.cds1, TraesCS5A02G405500.1.cds1, TraesCS5A02G405600.1.cds1, TraesCS5B02G403700.1, TraesCS5B02G410300.1.cds1, TraesCS5D02G408200.1, TraesCS5D02G415600.1.cds1, TraesCS7A02G548000.1.cds1, TraesCS7A02G548100.1.cds1, TraesCS7A02G548200.1.cds1, TraesCS7A02G552100.1.cds1, TraesCS7B02G370700.1, TraesCS7B02G471300.1.cds1, TraesCS7B02G471400.1.cds1, TraesCS7B02G471500.1.cds1, TraesCS7B02G471900.1.cds1, TraesCS7B02G493700.1, TraesCS7D02G534700.1.cds1, TraesCS7D02G534800.1.cds1, TraesCS7D02G534900.1.cds1, TraesCS7D02G535000.1, TraesCSU02G020700.1, TraesCSU02G169600.1.cds1
Poaceae	Zea mays	11	Zm00001eb002620_P002, Zm00001eb022500_P001 ... Zm00001eb228500_P001, Zm00001eb228510_P001, Zm00001eb270440_P001, Zm00001eb270450_P001, Zm00001eb272050_P001, Zm00001eb272090_P001, Zm00001eb332350_P001, Zm00001eb346860_P001, Zm00001eb354540_P001
Poaceae	Zoysia japonica	6	nbis-gene-14503, nbis-gene-40816, nbis-gene-47031 ... nbis-gene-47032, nbis-gene-50128, nbis-gene-6638
Poaceae	Zoysia macrostachya	6	Zma_g10160, Zma_g15617, Zma_g15618, Zma_g26391, Zma_g26821 ... Zma_g33440
Portulacaceae	Portulaca oleracea	16	evm.TU.LG04.1896, evm.TU.LG04.1897, evm.TU.LG04.1898 ... evm.TU.LG04.1899, evm.TU.LG04.1901, evm.TU.LG04.1902, evm.TU.LG06.1636, evm.TU.LG06.440, evm.TU.LG06.442, evm.TU.LG06.446, evm.TU.LG06.447, evm.TU.LG06.448, evm.TU.LG06.449, evm.TU.LG06.453, evm.TU.LG11.992, evm.TU.LG11.993
Posidoniaceae	Posidonia oceanica	6	gene.Posoc01g09090, gene.Posoc02g11190, gene.Posoc02g11200 ... gene.Posoc02g11210, gene.Posoc07g06270, gene.Posoc07g06290
Rhizophoraceae	Bruguiera sexangula	5	evm.TU.Scaffold_2_RagTag.42, evm.TU.Scaffold_5_RagTag.725 ... evm.TU.Scaffold_6_RagTag.2170, evm.TU.Scaffold_6_RagTag.2171, evm.TU.Scaffold_9_RagTag.689
Rhizophoraceae	Carallia pectinifolia	6	nbisL1-mrna-10620, nbisL1-mrna-16963, nbisL1-mrna-32 ... nbisL1-mrna-34, nbisL1-mrna-38, nbisL1-mrna-40
Rhizophoraceae	Ceriops tagal	4	nbisL1-mrna-107, nbisL1-mrna-13392, nbisL1-mrna-18423 ... nbisL1-mrna-6214
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-11365, nbisL1-mrna-11662, nbisL1-mrna-7485
Rhizophoraceae	Kandelia candel	4	add.evm.TU.utg000011l.552, evm.TU.utg000003l.150 ... evm.TU.utg000006l.612, evm.TU.utg000009l.1214
Rhizophoraceae	Kandelia obovata	3	Maker00005209, Maker00005953, Maker00007266
Rhizophoraceae	Rhizophora apiculata	5	nbisL1-mrna-10167, nbisL1-mrna-14089, nbisL1-mrna-14090 ... nbisL1-mrna-15710, nbisL1-mrna-1647
Rhizophoraceae	Rhizophora mangle	5	nbisL1-mrna-24128, nbisL1-mrna-24129, nbisL1-mrna-2944 ... nbisL1-mrna-5351, nbisL1-mrna-7360
Salicaceae	Populus euphratica	9	populus_peu08627, populus_peu08628, populus_peu08630 ... populus_peu08631, populus_peu27435, populus_peu31419, populus_peu36714, populus_peu36715, populus_peu36717
Solanaceae	Lycium barbarum	10	gene-LOC132606673, gene-LOC132606674, gene-LOC132607839 ... gene-LOC132608118, gene-LOC132611120, gene-LOC132621322, gene-LOC132622236, gene-LOC132632390, gene-LOC132632958, gene-LOC132632961
Solanaceae	Solanum chilense	7	SOLCI000128600, SOLCI000128700, SOLCI000308600 ... SOLCI002160200, SOLCI002643800, SOLCI004629700, SOLCI005567900
Solanaceae	Solanum pennellii	7	gene-LOC107001553, gene-LOC107001702, gene-LOC107002339 ... gene-LOC107002341, gene-LOC107008831, gene-LOC107010447, gene-LOC107011490
Tamaricaceae	Reaumuria soongarica	1	gene_8680
Zosteraceae	Zostera marina	2	Zosma02g11610.v3.1, Zosma03g12150.v3.1