Basic Information
Locus ID:
Lb2G08534
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Short Name:
UPL4
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 18005276 | 18011462 | - | Lb2G08534 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.57 | 170,108.94 Da | 46.65 | 93.46 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 1138 | 1523 | 3.94857E-119 | IPR000569 |
| CDD | cd00078 | HECTc | 1138 | 1523 | 3.94857E-119 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1186 | 1525 | 1.7E-85 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1186 | 1525 | 1.7E-85 | IPR000569 |
| SUPERFAMILY | SSF48371 | ARM repeat | 104 | 536 | 4.74E-28 | IPR016024 |
| SUPERFAMILY | SSF48371 | ARM repeat | 104 | 536 | 4.74E-28 | IPR016024 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 1126 | 1518 | 2.88E-101 | IPR035983 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 1126 | 1518 | 2.88E-101 | IPR035983 |
| Gene3D | G3DSA:3.30.2160.10 | Hect, E3 ligase catalytic domain | 1276 | 1369 | 7.5E-44 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 98 | 538 | 4.4E-38 | IPR011989 |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1410 | 1523 | 3.2E-33 | - |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 1140 | 1404 | 7.5E-44 | - |
| Gene3D | G3DSA:3.30.2160.10 | Hect, E3 ligase catalytic domain | 1276 | 1369 | 7.5E-44 | - |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 1140 | 1404 | 7.5E-44 | - |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1410 | 1523 | 3.2E-33 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 98 | 538 | 4.4E-38 | IPR011989 |
| SMART | SM00119 | hect_3 | 1148 | 1525 | 1.3E-112 | IPR000569 |
| SMART | SM00119 | hect_3 | 1148 | 1525 | 1.3E-112 | IPR000569 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1151 | 1525 | 70.162003 | IPR000569 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1151 | 1525 | 70.162003 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 93 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 26 | 70 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 26 | 70 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1110 | 1133 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 850 | 873 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1112 | 1133 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 72 | 93 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 850 | 897 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 850 | 873 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 93 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 850 | 897 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1112 | 1133 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 72 | 93 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1110 | 1133 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
| Coils | Coil | Coil | 602 | 622 | - | - |
| Coils | Coil | Coil | 602 | 622 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G02880.1 | ubiquitin-protein ligase 4. encodes a ubiquitin-protein ligase containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis. | 0 |
| RefSeq | XP_034693260.1 | E3 ubiquitin-protein ligase UPL4 [Vitis riparia] | 0 |
| Q9LYZ7 | E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis thaliana OX=3702 GN=UPL4 PE=3 SV=1 | 0 | |
| TrEMBL | A0A5B6YRT3 | HECT-type E3 ubiquitin transferase OS=Davidia involucrata OX=16924 GN=Din_003786 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology