Basic Information
Locus ID:
Lb2G08531
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Short Name:
UPL4
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 17863872 | 17870049 | + | Lb2G08531 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.32 | 155,589.08 Da | 46.31 | 93.56 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 1007 | 1392 | 3.99106E-119 | IPR000569 |
| CDD | cd00078 | HECTc | 1007 | 1392 | 3.99106E-119 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1055 | 1394 | 6.2E-86 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1055 | 1394 | 6.2E-86 | IPR000569 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 996 | 1387 | 1.96E-101 | IPR035983 |
| SUPERFAMILY | SSF48371 | ARM repeat | 107 | 460 | 1.2E-13 | IPR016024 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 996 | 1387 | 1.96E-101 | IPR035983 |
| SUPERFAMILY | SSF48371 | ARM repeat | 107 | 460 | 1.2E-13 | IPR016024 |
| Gene3D | G3DSA:3.30.2160.10 | Hect, E3 ligase catalytic domain | 1145 | 1238 | 8.3E-44 | - |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 1009 | 1273 | 8.3E-44 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 98 | 465 | 3.6E-15 | IPR011989 |
| Gene3D | G3DSA:3.30.2160.10 | Hect, E3 ligase catalytic domain | 1145 | 1238 | 8.3E-44 | - |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1279 | 1392 | 3.1E-33 | - |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 1009 | 1273 | 8.3E-44 | - |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1279 | 1392 | 3.1E-33 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 98 | 465 | 3.6E-15 | IPR011989 |
| SMART | SM00119 | hect_3 | 1017 | 1394 | 1.2E-112 | IPR000569 |
| SMART | SM00119 | hect_3 | 1017 | 1394 | 1.2E-112 | IPR000569 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1020 | 1394 | 69.929489 | IPR000569 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1020 | 1394 | 69.929489 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 26 | 70 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 779 | 811 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 779 | 817 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 26 | 70 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 779 | 811 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 75 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 75 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 779 | 817 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G02880.1 | ubiquitin-protein ligase 4. encodes a ubiquitin-protein ligase containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis. | 0 |
| RefSeq | XP_041023519.1 | LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase UPL4 [Juglans microcarpa x Juglans regia] | 0 |
| Q9LYZ7 | E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis thaliana OX=3702 GN=UPL4 PE=3 SV=1 | 0 | |
| TrEMBL | A0A6P9E9T8 | HECT-type E3 ubiquitin transferase OS=Juglans regia OX=51240 GN=LOC108981200 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology