Basic Information
Locus ID:
Lb2G08467
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 15332305 | 15336054 | + | Lb2G08467 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.67 | 76,059.72 Da | 48.09 | 93.62 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00651 | BTB/POZ domain | 28 | 118 | 2.7E-8 | IPR000210 |
| Pfam | PF03000 | NPH3 family | 224 | 501 | 1.9E-89 | IPR027356 |
| Pfam | PF00651 | BTB/POZ domain | 28 | 118 | 2.7E-8 | IPR000210 |
| Pfam | PF03000 | NPH3 family | 224 | 501 | 1.9E-89 | IPR027356 |
| SUPERFAMILY | SSF54695 | POZ domain | 15 | 119 | 1.15E-18 | IPR011333 |
| SUPERFAMILY | SSF54695 | POZ domain | 15 | 119 | 1.15E-18 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 14 | 145 | 2.2E-13 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 14 | 145 | 2.2E-13 | IPR011333 |
| SMART | SM00225 | BTB_4 | 29 | 138 | 3.5E-7 | IPR000210 |
| SMART | SM00225 | BTB_4 | 29 | 138 | 3.5E-7 | IPR000210 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 224 | 525 | 89.293274 | IPR027356 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 224 | 525 | 89.293274 | IPR027356 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 29 | 102 | 11.667693 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 29 | 102 | 11.667693 | IPR000210 |
| Coils | Coil | Coil | 586 | 606 | - | - |
| Coils | Coil | Coil | 586 | 606 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G03250.1 | Phototropic-responsive NPH3 family protein. | 0 |
| RefSeq | XP_020413645.1 | BTB/POZ domain-containing protein At5g03250-like [Prunus persica] | 0 |
| Q9LYW0 | BTB/POZ domain-containing protein At5g03250 OS=Arabidopsis thaliana OX=3702 GN=At5g03250 PE=2 SV=1 | 0 | |
| TrEMBL | A0A251QJ38 | NPH3 domain-containing protein OS=Prunus persica OX=3760 GN=PRUPE_2G212500 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology