halophFGD

Basic Information

Locus ID: Lb2G08459

Species & Taxonomic ID: Limonium bicolor & 293754

Genome Assembly: GCA_023374045.1

Description: WD-40 repeat-containing protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr02	15173109	15175705	+	Lb2G08459

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
4.79	35,166.71 Da	35.50	80.32	-0.43

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00400	WD domain, G-beta repeat	124	160	0.0025	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	268	303	4.8E-4	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	209	247	0.002	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	209	247	0.002	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	124	160	0.0025	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	268	303	4.8E-4	IPR001680
SUPERFAMILY	SSF50978	WD40 repeat-like	21	308	1.62E-47	IPR036322
SUPERFAMILY	SSF50978	WD40 repeat-like	21	308	1.62E-47	IPR036322
Gene3D	G3DSA:2.130.10.10	-	6	314	2.9E-100	IPR015943
Gene3D	G3DSA:2.130.10.10	-	6	314	2.9E-100	IPR015943
SMART	SM00320	WD40_4	120	160	7.5E-5	IPR001680
SMART	SM00320	WD40_4	71	111	0.0043	IPR001680
SMART	SM00320	WD40_4	207	247	1.8E-5	IPR001680
SMART	SM00320	WD40_4	19	58	220.0	IPR001680
SMART	SM00320	WD40_4	163	203	0.034	IPR001680
SMART	SM00320	WD40_4	264	304	0.0025	IPR001680
SMART	SM00320	WD40_4	163	203	0.034	IPR001680
SMART	SM00320	WD40_4	19	58	220.0	IPR001680
SMART	SM00320	WD40_4	264	304	0.0025	IPR001680
SMART	SM00320	WD40_4	207	247	1.8E-5	IPR001680
SMART	SM00320	WD40_4	120	160	7.5E-5	IPR001680
SMART	SM00320	WD40_4	71	111	0.0043	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	78	120	9.806668	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	214	249	12.914561	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	271	305	9.03805	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	127	169	11.176815	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	127	163	8.702878	-
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	127	163	8.702878	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	127	169	11.176815	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	214	249	10.732868	-
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	214	249	10.732868	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	271	305	9.03805	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	214	249	12.914561	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	78	120	9.806668	IPR001680
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	234	248	-	IPR019775
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	98	112	-	IPR019775
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	98	112	-	IPR019775
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	234	248	-	IPR019775
PRINTS	PR00320	G protein beta WD-40 repeat signature	190	204	3.4E-5	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	98	112	3.4E-5	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	98	112	3.4E-5	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	234	248	3.4E-5	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	190	204	3.4E-5	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	234	248	3.4E-5	IPR020472

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K10752 (histone-binding protein RBBP4)

Pathway:

ko04218 (Cellular senescence) map04218 (Cellular senescence)

Best hit

Source	Best Hit ID	Description
TAIR	AT2G16780.1	Transducin family protein / WD-40 repeat family protein. Encodes a WD-40 repeat protein similar to yeast MSI1.
RefSeq	XP_028765630.1	WD-40 repeat-containing protein MSI3-like [Prosopis alba]
Swiss-Prot	O22468	WD-40 repeat-containing protein MSI2 OS=Arabidopsis thaliana OX=3702 GN=MSI2 PE=2 SV=1
TrEMBL	I1LPT2	CAF1C_H4-bd domain-containing protein OS=Glycine max OX=3847 GN=GLYMA_12G033100 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg26393, jg28419, jg28873, jg30101
Aizoaceae	Mesembryanthemum crystallinum	2	gene_13100, gene_21909
Amaranthaceae	Atriplex hortensis	1	Ah009662
Amaranthaceae	Beta vulgaris	2	BVRB_2g034770, BVRB_9g214050
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg12230, Sbi_jg20493, Sbi_jg23279, Sbi_jg47198
Amaranthaceae	Salicornia europaea	2	Seu_jg17076, Seu_jg21471
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00009128, GOSA_00020443
Amaranthaceae	Suaeda glauca	6	Sgl55460, Sgl56111, Sgl61444, Sgl63540, Sgl68020, Sgl68024
Amaranthaceae	Chenopodium album	5	gene:ENSEOMG00000018069, gene:ENSEOMG00000019355 ... gene:ENSEOMG00000021669, gene:ENSEOMG00000048823, gene:ENSEOMG00000052523
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.2AG0013320, CQ.Regalona.r1.2BG0015290 ... CQ.Regalona.r1.7BG0002860, CQ.Regalona.r1.9AG0021760
Anacardiaceae	Pistacia vera	4	pistato.v30110120, pistato.v30212620, pistato.v30243100 ... pistato.v30279940
Apiaceae	Apium graveolens	3	Ag3G00792, Ag6G02374, Ag7G01979
Arecaceae	Cocos nucifera	3	COCNU_09G004560, COCNU_12G000390, COCNU_14G008890
Arecaceae	Phoenix dactylifera	4	gene-LOC103710495, gene-LOC103719231, gene-LOC103723090 ... gene-LOC120112753
Asparagaceae	Asparagus officinalis	4	AsparagusV1_03.2205.V1.1, AsparagusV1_06.1928.V1.1 ... AsparagusV1_06.1929.V1.1, AsparagusV1_07.2656.V1.1
Asteraceae	Flaveria trinervia	4	Ftri13G24913, Ftri15G11587, Ftri15G12518, Ftri15G27512
Brassicaceae	Arabidopsis thaliana	3	AT2G16780.1, AT4G35050.1, AT5G58230.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10013638m.g.v1.0, Thhalv10022705m.g.v1.0 ... Thhalv10025286m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp3g29950.v2.2, Sp6g19890.v2.2, Sp7g32820.v2.2
Brassicaceae	Brassica nigra	6	BniB02g012940.2N, BniB02g037620.2N, BniB03g064170.2N ... BniB04g026550.2N, BniB05g037850.2N, BniB08g013340.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq07G1710
Casuarinaceae	Casuarina glauca	2	Cgl05G0979, Cgl07G1855
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno11g10790, gene.Cymno13g02630
Dunaliellaceae	Dunaliella salina	1	Dusal.0084s00027.v1.0
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate02g00090, gene.Thate04g17070, gene.Thate07g18680
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-9461
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG01.2304, evm.TU.LG08.317
Plantaginaceae	Plantago ovata	3	Pov_00002034, Pov_00007352, Pov_00037619
Plumbaginaceae	Limonium bicolor	5	Lb2G08459, Lb2G12725, Lb2G12726, Lb3G17633, Lb5G27625
Poaceae	Echinochloa crus-galli	6	AH01.1247, AH03.2770, BH01.1476, BH03.2915, CH03.3116 ... CH06.2650
Poaceae	Eleusine coracana subsp. coracana	3	gene-QOZ80_3AG0224440, gene-QOZ80_3BG0269480 ... gene-QOZ80_6AG0527890
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.5HG0500740.1, HORVU.MOREX.r3.5HG0508600.1
Poaceae	Lolium multiflorum	2	gene-QYE76_007251, gene-QYE76_063518
Poaceae	Oryza coarctata	4	Oco05G018780, Oco06G019570, Oco17G010710, Oco18G010650
Poaceae	Oryza sativa	2	LOC_Os03g43890.1, LOC_Os09g36900.1
Poaceae	Paspalum vaginatum	2	gene-BS78_01G145400, gene-BS78_02G258500
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0104479, Pt_Chr0104740, Pt_Chr0701064, Pt_Chr0701089
Poaceae	Sporobolus alterniflorus	7	Chr01G009470, Chr04G024760, Chr10G014410, Chr11G007880 ... Chr12G027520, Chr14G009940, Chr21G010090
Poaceae	Thinopyrum elongatum	4	Tel3E01G109700, Tel5E01G527000, Tel5E01G597900 ... Tel5E01G680900
Poaceae	Triticum dicoccoides	4	gene_TRIDC5AG048970, gene_TRIDC5AG055010 ... gene_TRIDC5BG052880, gene_TRIDC5BG058930
Poaceae	Triticum aestivum	7	TraesCS5A02G331900.1, TraesCS5B02G332200.1 ... TraesCS5B02G378700.1, TraesCS5D02G337800.1, TraesCS5D02G385600.1, TraesCS5D02G385800.1, TraesCSU02G072700.1
Poaceae	Zea mays	4	Zm00001eb050670_P002, Zm00001eb050680_P002 ... Zm00001eb218750_P001, Zm00001eb331890_P002
Poaceae	Zoysia japonica	5	nbis-gene-20452, nbis-gene-20453, nbis-gene-35216 ... nbis-gene-39616, nbis-gene-39617
Poaceae	Zoysia macrostachya	3	Zma_g3200, Zma_g32167, Zma_g880
Portulacaceae	Portulaca oleracea	4	evm.TU.LG07.860, evm.TU.LG08.1124, evm.TU.LG15.72 ... evm.TU.LG22.870
Posidoniaceae	Posidonia oceanica	2	gene.Posoc08g05540, gene.Posoc10g05400
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_18_RagTag.147, evm.TU.Scaffold_2_RagTag.90
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-28415, nbisL1-mrna-5119
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-10998, nbisL1-mrna-19423
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-19025, nbisL1-mrna-9346
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000009l.1185, evm.TU.utg000034l.13
Rhizophoraceae	Kandelia obovata	2	Maker00005808, Maker00018781
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-14125, nbisL1-mrna-15735
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-21156, nbisL1-mrna-22924
Salicaceae	Populus euphratica	8	populus_peu08700, populus_peu26699, populus_peu26743 ... populus_peu31132, populus_peu36650, populus_peu37870, populus_peu38113, populus_peu38130
Solanaceae	Lycium barbarum	2	gene-LOC132598732, gene-LOC132599329
Solanaceae	Solanum chilense	2	SOLCI002790400, SOLCI006583800
Solanaceae	Solanum pennellii	2	gene-LOC107003156, gene-LOC107008415
Tamaricaceae	Reaumuria soongarica	3	STRG.7683_chr05_+, gene_18049, gene_8872
Tamaricaceae	Tamarix chinensis	3	TC02G1002, TC10G0136, TC11G1524
Zosteraceae	Zostera marina	2	Zosma03g21330.v3.1, Zosma03g23820.v3.1