Basic Information
Locus ID:
Lb2G08454
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 15013568 | 15015349 | + | Lb2G08454 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.25 | 33,220.34 Da | 58.90 | 90.03 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03000 | NPH3 family | 223 | 279 | 5.6E-11 | IPR027356 |
| Pfam | PF00651 | BTB/POZ domain | 27 | 117 | 1.5E-8 | IPR000210 |
| Pfam | PF03000 | NPH3 family | 223 | 279 | 5.6E-11 | IPR027356 |
| Pfam | PF00651 | BTB/POZ domain | 27 | 117 | 1.5E-8 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 12 | 118 | 3.4E-19 | IPR011333 |
| SUPERFAMILY | SSF54695 | POZ domain | 12 | 118 | 3.4E-19 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 13 | 180 | 1.3E-13 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 13 | 180 | 1.3E-13 | IPR011333 |
| SMART | SM00225 | BTB_4 | 28 | 137 | 2.3E-6 | IPR000210 |
| SMART | SM00225 | BTB_4 | 28 | 137 | 2.3E-6 | IPR000210 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 223 | 300 | 13.012074 | IPR027356 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 28 | 101 | 11.274735 | IPR000210 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 223 | 300 | 13.012074 | IPR027356 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 28 | 101 | 11.274735 | IPR000210 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 275 | 300 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 275 | 300 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 275 | 290 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 275 | 290 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G03250.1 | Phototropic-responsive NPH3 family protein. | 0 |
| RefSeq | XP_018828658.1 | BTB/POZ domain-containing protein At5g03250-like [Juglans regia] | 0 |
| Q9LYW0 | BTB/POZ domain-containing protein At5g03250 OS=Arabidopsis thaliana OX=3702 GN=At5g03250 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2I4FAJ2 | BTB/POZ domain-containing protein At5g03250-like OS=Juglans regia OX=51240 GN=LOC108997028 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology