Basic Information
Locus ID:
Lb2G08398
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 12319692 | 12320596 | + | Lb2G08398 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.76 | 19,280.12 Da | 48.84 | 84.79 | 0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00270 | DEAD/DEAH box helicase | 50 | 166 | 8.5E-18 | IPR011545 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 50 | 166 | 8.5E-18 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 52 | 166 | 3.91E-28 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 52 | 166 | 3.91E-28 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 42 | 169 | 7.2E-26 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 42 | 169 | 7.2E-26 | IPR027417 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 42 | 169 | 12.709673 | IPR014001 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 42 | 169 | 12.709673 | IPR014001 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G54270.2 | eif4a-2. member of eIF4A - eukaryotic initiation factor 4A | 0 |
| RefSeq | XP_010552222.1 | PREDICTED: eukaryotic initiation factor 4A-1-like [Tarenaya hassleriana] | 0 |
| Q40471 | Eukaryotic initiation factor 4A-9 OS=Nicotiana tabacum OX=4097 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5B6Z9V4 | Helicase ATP-binding domain-containing protein OS=Davidia involucrata OX=16924 GN=Din_010341 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology