Basic Information
Locus ID:
Lb2G08394
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Encoded by
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 12198916 | 12202843 | - | Lb2G08394 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.72 | 47,442.72 Da | 54.12 | 88.88 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12678 | RING-H2 zinc finger domain | 345 | 402 | 8.5E-11 | IPR024766 |
| Pfam | PF12678 | RING-H2 zinc finger domain | 345 | 402 | 8.5E-11 | IPR024766 |
| SUPERFAMILY | SSF57850 | RING/U-box | 345 | 408 | 2.43E-17 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 345 | 408 | 2.43E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 302 | 408 | 3.3E-17 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 302 | 408 | 3.3E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 346 | 401 | 6.6E-8 | IPR001841 |
| SMART | SM00184 | ring_2 | 346 | 401 | 6.6E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 346 | 402 | 11.899158 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 346 | 402 | 11.899158 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G44330.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_009623348.2 | E3 ubiquitin-protein ligase RNF181-like [Nicotiana tomentosiformis] | 0 |
| Q8LPN7 | E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19950 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1S3X591 | E3 ubiquitin-protein ligase RNF181-like OS=Nicotiana tabacum OX=4097 GN=LOC107761328 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||