Basic Information
Locus ID:
Lb2G08283
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Holliday junction DNA helicase ruvB N-terminus
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 5833894 | 5839021 | + | Lb2G08283 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.34 | 94,497.54 Da | 45.23 | 88.55 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00009 | AAA | 539 | 704 | 4.47361E-24 | - |
| CDD | cd00009 | AAA | 539 | 704 | 4.47361E-24 | - |
| Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) | 573 | 703 | 2.7E-38 | IPR003959 |
| Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) | 573 | 703 | 2.7E-38 | IPR003959 |
| Pfam | PF17862 | AAA+ lid domain | 727 | 769 | 3.8E-12 | IPR041569 |
| Pfam | PF17862 | AAA+ lid domain | 727 | 769 | 3.8E-12 | IPR041569 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 533 | 772 | 8.37E-59 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 533 | 772 | 8.37E-59 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 532 | 816 | 2.3E-95 | IPR027417 |
| Gene3D | G3DSA:1.10.8.60 | - | 705 | 808 | 2.3E-95 | - |
| Gene3D | G3DSA:1.10.8.60 | - | 705 | 808 | 2.3E-95 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 532 | 816 | 2.3E-95 | IPR027417 |
| SMART | SM00382 | AAA_5 | 569 | 706 | 1.2E-20 | IPR003593 |
| SMART | SM00382 | AAA_5 | 569 | 706 | 1.2E-20 | IPR003593 |
| ProSitePatterns | PS00674 | AAA-protein family signature. | 676 | 695 | - | IPR003960 |
| ProSitePatterns | PS00674 | AAA-protein family signature. | 676 | 695 | - | IPR003960 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 766 | 791 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 185 | 206 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 185 | 206 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 185 | 208 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 766 | 791 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 185 | 208 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G64110.2 | P-loop containing nucleoside triphosphate hydrolases superfamily protein. | 0 |
| RefSeq | XP_010676390.2 | ribosome biogenesis ATPase RIX7 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9P7J5 | Uncharacterized AAA domain-containing protein C24B10.10c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPCC24B10.10c PE=3 SV=1 | 0 | |
| TrEMBL | A0A2R6PHW5 | Spastin like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc28808 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology