Basic Information
Locus ID:
Lb2G08269
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
SPA1-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 5316997 | 5324111 | + | Lb2G08269 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.32 | 118,262.98 Da | 46.30 | 76.54 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 745 | 1054 | 3.44284E-38 | - |
| CDD | cd00200 | WD40 | 745 | 1054 | 3.44284E-38 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 829 | 866 | 0.038 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 829 | 866 | 0.038 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 918 | 950 | 0.02 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 918 | 950 | 0.02 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 741 | 1055 | 3.51E-50 | IPR036322 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 283 | 555 | 4.29E-13 | IPR011009 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 741 | 1055 | 3.51E-50 | IPR036322 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 283 | 555 | 4.29E-13 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 286 | 566 | 2.7E-17 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 717 | 1058 | 2.1E-126 | IPR015943 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 286 | 566 | 2.7E-17 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 717 | 1058 | 2.1E-126 | IPR015943 |
| SMART | SM00320 | WD40_4 | 729 | 773 | 0.26 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1017 | 1056 | 39.0 | IPR001680 |
| SMART | SM00220 | serkin_6 | 326 | 558 | 0.0048 | IPR000719 |
| SMART | SM00320 | WD40_4 | 1017 | 1056 | 39.0 | IPR001680 |
| SMART | SM00220 | serkin_6 | 326 | 558 | 0.0048 | IPR000719 |
| SMART | SM00320 | WD40_4 | 961 | 1000 | 200.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 912 | 950 | 3.6E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 729 | 773 | 0.26 | IPR001680 |
| SMART | SM00320 | WD40_4 | 912 | 950 | 3.6E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 826 | 866 | 3.9E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 961 | 1000 | 200.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 784 | 823 | 0.038 | IPR001680 |
| SMART | SM00320 | WD40_4 | 869 | 908 | 0.012 | IPR001680 |
| SMART | SM00320 | WD40_4 | 784 | 823 | 0.038 | IPR001680 |
| SMART | SM00320 | WD40_4 | 826 | 866 | 3.9E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 869 | 908 | 0.012 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 833 | 875 | 9.940341 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 790 | 832 | 10.70896 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 919 | 959 | 13.516088 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 790 | 832 | 10.70896 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 833 | 875 | 9.940341 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 919 | 959 | 13.516088 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 919 | 952 | 10.811958 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 919 | 952 | 10.811958 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 937 | 951 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 810 | 824 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 810 | 824 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 937 | 951 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 853 | 867 | 3.0E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 937 | 951 | 3.0E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 810 | 824 | 3.0E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 853 | 867 | 3.0E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 937 | 951 | 3.0E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 810 | 824 | 3.0E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 130 | 161 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 137 | 161 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 137 | 161 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 130 | 161 | - | - |
| Coils | Coil | Coil | 598 | 618 | - | - |
| Coils | Coil | Coil | 598 | 618 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11110.1 | SPA1-related 2. Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA2 primarily regulates seedling development in darkness and has little function in light-grown seedlings or adult plants. | 0 |
| RefSeq | XP_021757615.1 | protein SPA1-RELATED 2-like isoform X1 [Chenopodium quinoa] | 0 |
| Q9T014 | Protein SPA1-RELATED 2 OS=Arabidopsis thaliana OX=3702 GN=SPA2 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9QJF8 | WD_REPEATS_REGION domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_178660 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology