Basic Information
Locus ID:
Lb2G08206
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 3632235 | 3634998 | + | Lb2G08206 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.11 | 39,668.46 Da | 47.22 | 64.18 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16571 | RING-HC_SIAHs | 94 | 132 | 5.89325E-14 | - |
| CDD | cd16571 | RING-HC_SIAHs | 94 | 132 | 5.89325E-14 | - |
| Pfam | PF03145 | Seven in absentia protein family | 138 | 337 | 3.4E-76 | IPR018121 |
| Pfam | PF03145 | Seven in absentia protein family | 138 | 337 | 3.4E-76 | IPR018121 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 149 | 341 | 4.32E-45 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 82 | 138 | 3.28E-6 | - |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 149 | 341 | 4.32E-45 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 82 | 138 | 3.28E-6 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 151 | 200 | 1.3E-16 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 41 | 150 | 6.2E-7 | IPR013083 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 201 | 337 | 1.5E-35 | IPR008974 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 201 | 337 | 1.5E-35 | IPR008974 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 41 | 150 | 6.2E-7 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 151 | 200 | 1.3E-16 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 96 | 132 | 9.59769 | IPR001841 |
| ProSiteProfiles | PS51081 | Zinc finger SIAH-type profile. | 149 | 209 | 14.159914 | IPR013010 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 96 | 132 | 9.59769 | IPR001841 |
| ProSiteProfiles | PS51081 | Zinc finger SIAH-type profile. | 149 | 209 | 14.159914 | IPR013010 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 84 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 60 | 84 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 84 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 23 | 54 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 23 | 54 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 60 | 84 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G27880.1 | Protein with RING/U-box and TRAF-like domains. | 0 |
| RefSeq | XP_043718200.1 | E3 ubiquitin-protein ligase SINAT5-like [Telopea speciosissima] | 0 |
| Q9STN8 | E3 ubiquitin-protein ligase SINAT4 OS=Arabidopsis thaliana OX=3702 GN=SINAT4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1U8AWF9 | RING-type E3 ubiquitin transferase OS=Nelumbo nucifera OX=4432 GN=LOC104604788 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology