Basic Information
Locus ID:
Lb2G08140
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 1290631 | 1293387 | - | Lb2G08140 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.52 | 28,794.77 Da | 45.43 | 70.04 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03145 | Seven in absentia protein family | 36 | 235 | 1.2E-76 | IPR018121 |
| Pfam | PF03145 | Seven in absentia protein family | 36 | 235 | 1.2E-76 | IPR018121 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 47 | 239 | 1.57E-45 | - |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 47 | 239 | 1.57E-45 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 99 | 235 | 6.8E-36 | IPR008974 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 42 | 98 | 1.2E-17 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 42 | 98 | 1.2E-17 | IPR013083 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 99 | 235 | 6.8E-36 | IPR008974 |
| ProSiteProfiles | PS51081 | Zinc finger SIAH-type profile. | 47 | 107 | 14.159914 | IPR013010 |
| ProSiteProfiles | PS51081 | Zinc finger SIAH-type profile. | 47 | 107 | 14.159914 | IPR013010 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G27880.1 | Protein with RING/U-box and TRAF-like domains. | 0 |
| RefSeq | XP_006444835.1 | E3 ubiquitin-protein ligase SINAT3 [Citrus clementina] | 0 |
| Q9STN8 | E3 ubiquitin-protein ligase SINAT4 OS=Arabidopsis thaliana OX=3702 GN=SINAT4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A067H6D5 | RING-type E3 ubiquitin transferase OS=Citrus sinensis OX=2711 GN=CISIN_1g020592mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology