Basic Information
Locus ID:
Lb1G08107
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 540136968 | 540145978 | + | Lb1G08107 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.74 | 66,350.74 Da | 49.42 | 85.77 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17920 | DEXHc_RecQ | 205 | 379 | 1.84976E-83 | - |
| CDD | cd18794 | SF2_C_RecQ | 380 | 513 | 1.69682E-64 | - |
| CDD | cd17920 | DEXHc_RecQ | 205 | 379 | 1.84976E-83 | - |
| CDD | cd18794 | SF2_C_RecQ | 380 | 513 | 1.69682E-64 | - |
| Pfam | PF16124 | RecQ zinc-binding | 516 | 586 | 9.1E-10 | IPR032284 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 213 | 359 | 5.0E-11 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 396 | 503 | 1.8E-15 | IPR001650 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 396 | 503 | 1.8E-15 | IPR001650 |
| Pfam | PF16124 | RecQ zinc-binding | 516 | 586 | 9.1E-10 | IPR032284 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 213 | 359 | 5.0E-11 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 250 | 524 | 1.07E-47 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 250 | 524 | 1.07E-47 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 302 | 379 | 1.8E-30 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 380 | 588 | 3.5E-57 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 170 | 301 | 1.2E-33 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 302 | 379 | 1.8E-30 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 170 | 301 | 1.2E-33 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 380 | 588 | 3.5E-57 | IPR027417 |
| SMART | SM00487 | ultradead3 | 207 | 388 | 1.4E-19 | IPR014001 |
| SMART | SM00490 | helicmild6 | 422 | 504 | 8.1E-23 | IPR001650 |
| SMART | SM00490 | helicmild6 | 422 | 504 | 8.1E-23 | IPR001650 |
| SMART | SM00487 | ultradead3 | 207 | 388 | 1.4E-19 | IPR014001 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 205 | 589 | 3.7E-134 | IPR004589 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 205 | 589 | 3.7E-134 | IPR004589 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 219 | 372 | 18.053963 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 394 | 544 | 18.251896 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 219 | 372 | 18.053963 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 394 | 544 | 18.251896 | IPR001650 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G05740.1 | RECQ helicase l1. | 0 |
| RefSeq | XP_031269491.1 | ATP-dependent DNA helicase Q-like 1 [Pistacia vera] | 0 |
| Q9FT74 | ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis thaliana OX=3702 GN=RECQL1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J5B6H2 | ATP-dependent DNA helicase OS=Nyssa sinensis OX=561372 GN=F0562_029249 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology