Basic Information
Locus ID:
Lb1G08105
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 539828618 | 539831585 | + | Lb1G08105 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.36 | 39,026.35 Da | 47.01 | 83.24 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18794 | SF2_C_RecQ | 138 | 271 | 2.72026E-66 | - |
| CDD | cd18794 | SF2_C_RecQ | 138 | 271 | 2.72026E-66 | - |
| Pfam | PF16124 | RecQ zinc-binding | 274 | 334 | 4.5E-7 | IPR032284 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 154 | 261 | 7.0E-16 | IPR001650 |
| Pfam | PF16124 | RecQ zinc-binding | 274 | 334 | 4.5E-7 | IPR032284 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 154 | 261 | 7.0E-16 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 136 | 328 | 1.65E-45 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 136 | 328 | 1.65E-45 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 138 | 337 | 1.0E-55 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 77 | 137 | 6.5E-20 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 77 | 137 | 6.5E-20 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 138 | 337 | 1.0E-55 | IPR027417 |
| SMART | SM00490 | helicmild6 | 180 | 262 | 8.1E-23 | IPR001650 |
| SMART | SM00490 | helicmild6 | 180 | 262 | 8.1E-23 | IPR001650 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 79 | 333 | 1.6E-92 | IPR004589 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 79 | 333 | 1.6E-92 | IPR004589 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 152 | 302 | 18.251896 | IPR001650 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 152 | 302 | 18.251896 | IPR001650 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G05740.2 | - | 0 |
| RefSeq | XP_010259380.1 | PREDICTED: ATP-dependent DNA helicase Q-like 1 [Nelumbo nucifera] | 0 |
| Q9FT74 | ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis thaliana OX=3702 GN=RECQL1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7J7L759 | ATP-dependent DNA helicase OS=Kingdonia uniflora OX=39325 GN=GIB67_007094 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology