Basic Information
Locus ID:
Lb1G08036
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Rhamnogalacturonate lyase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 519703796 | 519707988 | + | Lb1G08036 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.19 | 68,815.20 Da | 43.99 | 71.03 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10316 | RGL4_M | 285 | 384 | 6.525E-31 | IPR029413 |
| CDD | cd10317 | RGL4_C | 396 | 584 | 3.00173E-50 | - |
| CDD | cd10320 | RGL4_N | 42 | 251 | 3.11491E-42 | - |
| CDD | cd10317 | RGL4_C | 396 | 584 | 3.00173E-50 | - |
| CDD | cd10320 | RGL4_N | 42 | 251 | 3.11491E-42 | - |
| CDD | cd10316 | RGL4_M | 285 | 384 | 6.525E-31 | IPR029413 |
| Pfam | PF14686 | Polysaccharide lyase family 4, domain II | 309 | 380 | 1.9E-20 | IPR029413 |
| Pfam | PF06045 | Rhamnogalacturonate lyase family | 36 | 162 | 6.3E-45 | IPR010325 |
| Pfam | PF14683 | Polysaccharide lyase family 4, domain III | 394 | 583 | 3.0E-52 | IPR029411 |
| Pfam | PF14686 | Polysaccharide lyase family 4, domain II | 309 | 380 | 1.9E-20 | IPR029413 |
| Pfam | PF06045 | Rhamnogalacturonate lyase family | 36 | 162 | 6.3E-45 | IPR010325 |
| Pfam | PF14683 | Polysaccharide lyase family 4, domain III | 394 | 583 | 3.0E-52 | IPR029411 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 391 | 584 | 3.91E-43 | IPR008979 |
| SUPERFAMILY | SSF49452 | Starch-binding domain-like | 284 | 379 | 1.96E-6 | IPR013784 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 102 | 247 | 1.19E-6 | IPR011013 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 391 | 584 | 3.91E-43 | IPR008979 |
| SUPERFAMILY | SSF49452 | Starch-binding domain-like | 284 | 379 | 1.96E-6 | IPR013784 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 102 | 247 | 1.19E-6 | IPR011013 |
| Gene3D | G3DSA:2.60.40.1120 | - | 282 | 369 | 1.8E-6 | - |
| Gene3D | G3DSA:2.70.98.10 | - | 36 | 258 | 7.0E-9 | IPR014718 |
| Gene3D | G3DSA:2.70.98.10 | - | 36 | 258 | 7.0E-9 | IPR014718 |
| Gene3D | G3DSA:2.60.120.260 | - | 391 | 584 | 2.4E-15 | - |
| Gene3D | G3DSA:2.60.120.260 | - | 391 | 584 | 2.4E-15 | - |
| Gene3D | G3DSA:2.60.40.1120 | - | 282 | 369 | 1.8E-6 | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G09890.1 | Rhamnogalacturonate lyase family protein. | 0 |
| RefSeq | XP_021747845.1 | probable rhamnogalacturonate lyase B [Chenopodium quinoa] | 0 |
| TrEMBL | A0A803MBF5 | rhamnogalacturonan endolyase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology