Basic Information
Locus ID:
Lb1G07902
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
lysM domain receptor-like kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 497293151 | 497296670 | + | Lb1G07902 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.23 | 47,356.68 Da | 38.74 | 92.30 | 0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00118 | LysM | 126 | 168 | 3.34801E-6 | IPR018392 |
| CDD | cd00118 | LysM | 192 | 226 | 2.34407E-4 | IPR018392 |
| CDD | cd00118 | LysM | 126 | 168 | 3.34801E-6 | IPR018392 |
| CDD | cd00118 | LysM | 192 | 226 | 2.34407E-4 | IPR018392 |
| Pfam | PF01476 | LysM domain | 127 | 173 | 0.016 | IPR018392 |
| Pfam | PF01476 | LysM domain | 194 | 231 | 2.4E-4 | IPR018392 |
| Pfam | PF01476 | LysM domain | 127 | 173 | 0.016 | IPR018392 |
| Pfam | PF01476 | LysM domain | 194 | 231 | 2.4E-4 | IPR018392 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 343 | 413 | 6.44E-7 | IPR011009 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 343 | 413 | 6.44E-7 | IPR011009 |
| Gene3D | G3DSA:3.10.350.10 | LysM domain | 125 | 173 | 3.6E-8 | IPR036779 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 327 | 416 | 9.3E-11 | - |
| Gene3D | G3DSA:3.10.350.10 | LysM domain | 191 | 241 | 5.7E-6 | IPR036779 |
| Gene3D | G3DSA:3.10.350.10 | LysM domain | 191 | 241 | 5.7E-6 | IPR036779 |
| Gene3D | G3DSA:3.10.350.10 | LysM domain | 125 | 173 | 3.6E-8 | IPR036779 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 327 | 416 | 9.3E-11 | - |
| SMART | SM00257 | LysM_2 | 126 | 173 | 1.6E-5 | IPR018392 |
| SMART | SM00257 | LysM_2 | 126 | 173 | 1.6E-5 | IPR018392 |
| SMART | SM00257 | LysM_2 | 193 | 233 | 0.17 | IPR018392 |
| SMART | SM00257 | LysM_2 | 193 | 233 | 0.17 | IPR018392 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 192 | 239 | 9.552626 | IPR018392 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 192 | 239 | 9.552626 | IPR018392 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 125 | 172 | 10.162322 | IPR018392 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 125 | 172 | 10.162322 | IPR018392 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G31230.2 | - | 0 |
| RefSeq | XP_034686053.1 | serine/threonine receptor-like kinase NFP [Vitis riparia] | 0 |
| Q0GXS4 | Serine/threonine receptor-like kinase NFP OS=Medicago truncatula OX=3880 GN=NFP PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J5ACV9 | Protein kinase domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_035439 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg12638, jg27829, jg30621 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_6423 |
| Amaranthaceae | Atriplex hortensis | 3 | Ah029151, Ah029152, Ah029153 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g166020 |
| Amaranthaceae | Salicornia bigelovii | 8 | Sbi_jg1092, Sbi_jg1096, Sbi_jg1097, Sbi_jg1100, Sbi_jg1101 ... |
| Amaranthaceae | Salicornia europaea | 4 | Seu_jg3601, Seu_jg3602, Seu_jg3604, Seu_jg3605 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00022882, GOSA_00022885 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl74255, Sgl74334, Sgl74335, Sgl77824 |
| Amaranthaceae | Chenopodium album | 8 | gene:ENSEOMG00000006629, gene:ENSEOMG00000008352 ... |
| Amaranthaceae | Chenopodium quinoa | 7 | CQ.Regalona.r1.7AG0011420, CQ.Regalona.r1.7AG0011430 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30235780 |
| Apiaceae | Apium graveolens | 4 | Ag1G01816, Ag4G01026, Ag6G01493, Ag9G01739 |
| Arecaceae | Cocos nucifera | 2 | COCNU_05G000280, COCNU_07G007720 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103699281, gene-LOC103702746, gene-LOC103723952 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_04.2472.V1.1, AsparagusV1_08.1511.V1.1 ... |
| Asteraceae | Flaveria trinervia | 4 | Ftri14G04152, Ftri17G21238, Ftri6G11221, FtriNA20598 |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq07G0375, Ceq09G0744 |
| Casuarinaceae | Casuarina glauca | 3 | Cgl07G0386, Cgl07G0387, Cgl09G0806 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.913 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00019995, Pov_00029367 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G07902 |
| Poaceae | Echinochloa crus-galli | 6 | AH01.4457, AH07.3007, BH07.2832, CH01.5067, CH07.2912 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_2AG0140990, gene-QOZ80_2BG0196610 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.4HG0394920.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_024435, gene-QYE76_068469, gene-QYE76_069786 |
| Poaceae | Oryza coarctata | 4 | Oco03G018260, Oco04G019010, Oco06G007610, Oco06G007620 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g45750.1, LOC_Os03g13080.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G431400, gene-BS78_04G238300 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0203728 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr09G023440 |
| Poaceae | Thinopyrum elongatum | 2 | Tel4E01G409200, Tel6E01G481500 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC4AG009120, gene_TRIDC4BG041760 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS4A02G061400.1.cds1, TraesCS4B02G236800.1.cds1 ... |
| Poaceae | Zea mays | 4 | Zm00001eb009380_P001, Zm00001eb187300_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-22254, nbis-gene-4011 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g16884, Zma_g4111 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.949, evm.TU.LG12.794 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g17220 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_3_RagTag.286, evm.TU.Scaffold_3_RagTag.375 ... |
| Rhizophoraceae | Carallia pectinifolia | 5 | nbisL1-mrna-1548, nbisL1-mrna-1549, nbisL1-mrna-17166 ... |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-6967, nbisL1-mrna-7562 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-6018, nbisL1-mrna-6113 |
| Rhizophoraceae | Kandelia candel | 3 | add.evm.TU.utg000019l.413, add.evm.TU.utg000019l.445 ... |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012766 |
| Rhizophoraceae | Rhizophora apiculata | 4 | nbisL1-mrna-15563, nbisL1-mrna-19333, nbisL1-mrna-6402 ... |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-2292, nbisL1-mrna-3136, nbisL1-mrna-3139 |
| Salicaceae | Populus euphratica | 5 | populus_peu07461, populus_peu07462, populus_peu14290 ... |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132608981, gene-LOC132609067, gene-LOC132622935 |
| Solanaceae | Solanum chilense | 4 | SOLCI002407300, SOLCI002660500, SOLCI003953000 ... |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107009582, gene-LOC107030506, gene-LOC107030507 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.20256_chr09_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC06G2121 |
| Zosteraceae | Zostera marina | 1 | Zosma06g28740.v3.1 |