Basic Information
Locus ID:
Lb1G07853
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Heat Stress Transcription Factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 494860127 | 494862259 | + | Lb1G07853 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.46 | 33,450.81 Da | 61.46 | 60.99 | -0.71 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14686 | bZIP | 214 | 239 | 0.00796958 | - |
| CDD | cd14686 | bZIP | 214 | 239 | 0.00796958 | - |
| Pfam | PF00447 | HSF-type DNA-binding | 33 | 122 | 4.1E-32 | IPR000232 |
| Pfam | PF00447 | HSF-type DNA-binding | 33 | 122 | 4.1E-32 | IPR000232 |
| SUPERFAMILY | SSF46785 | Winged helix DNA-binding domain | 29 | 122 | 1.7E-34 | IPR036390 |
| SUPERFAMILY | SSF46785 | Winged helix DNA-binding domain | 29 | 122 | 1.7E-34 | IPR036390 |
| Gene3D | G3DSA:1.10.10.10 | - | 24 | 123 | 9.2E-38 | IPR036388 |
| Gene3D | G3DSA:1.10.10.10 | - | 24 | 123 | 9.2E-38 | IPR036388 |
| SMART | SM00415 | hsfneu3 | 29 | 122 | 5.1E-56 | IPR000232 |
| SMART | SM00415 | hsfneu3 | 29 | 122 | 5.1E-56 | IPR000232 |
| ProSitePatterns | PS00434 | HSF-type DNA-binding domain signature. | 72 | 96 | - | IPR000232 |
| ProSitePatterns | PS00434 | HSF-type DNA-binding domain signature. | 72 | 96 | - | IPR000232 |
| PRINTS | PR00056 | Heat shock factor (HSF) domain signature | 71 | 83 | 1.4E-20 | IPR000232 |
| PRINTS | PR00056 | Heat shock factor (HSF) domain signature | 84 | 96 | 1.4E-20 | IPR000232 |
| PRINTS | PR00056 | Heat shock factor (HSF) domain signature | 33 | 56 | 1.4E-20 | IPR000232 |
| PRINTS | PR00056 | Heat shock factor (HSF) domain signature | 84 | 96 | 1.4E-20 | IPR000232 |
| PRINTS | PR00056 | Heat shock factor (HSF) domain signature | 71 | 83 | 1.4E-20 | IPR000232 |
| PRINTS | PR00056 | Heat shock factor (HSF) domain signature | 33 | 56 | 1.4E-20 | IPR000232 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 159 | 183 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 159 | 183 | - | - |
| Coils | Coil | Coil | 213 | 240 | - | - |
| Coils | Coil | Coil | 213 | 240 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G62020.1 | heat shock transcription factor B2A. member of Heat Stress Transcription Factor (Hsf) family | 0 |
| RefSeq | XP_010693477.2 | heat stress transcription factor B-2a [Beta vulgaris subsp. vulgaris] | 0 |
| Q6Z9C8 | Heat stress transcription factor B-2b OS=Oryza sativa subsp. japonica OX=39947 GN=HSFB2B PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9RC68 | HSF_DOMAIN domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_083250 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology