Basic Information
Locus ID:
Lb1G07817
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
F-Box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 490618503 | 490620616 | + | Lb1G07817 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.07 | 42,337.92 Da | 55.20 | 78.93 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 315 | 354 | 7.0E-7 | IPR002893 |
| Pfam | PF01753 | MYND finger | 315 | 354 | 7.0E-7 | IPR002893 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 310 | 360 | 6.1E-10 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 12 | 67 | 1.83E-6 | IPR036047 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 310 | 360 | 6.1E-10 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 12 | 67 | 1.83E-6 | IPR036047 |
| SUPERFAMILY | SSF81901 | HCP-like | 84 | 204 | 7.98E-12 | - |
| SUPERFAMILY | SSF81901 | HCP-like | 84 | 204 | 7.98E-12 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 72 | 218 | 1.6E-16 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 72 | 218 | 1.6E-16 | IPR011990 |
| Gene3D | G3DSA:6.10.140.2220 | - | 307 | 356 | 1.8E-9 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 307 | 356 | 1.8E-9 | - |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 312 | 354 | 10.608826 | IPR002893 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 312 | 354 | 10.608826 | IPR002893 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67340.1 | HCP-like superfamily protein with MYND-type zinc finger. | 0 |
| RefSeq | XP_022737006.1 | F-box protein At1g67340 [Durio zibethinus] | 0 |
| Q9FYF9 | F-box protein At1g67340 OS=Arabidopsis thaliana OX=3702 GN=At1g67340 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C8ZJ29 | MYND-type domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology