Basic Information
Locus ID:
Lb1G07625
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Autophagy-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 468332540 | 468339389 | + | Lb1G07625 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.19 | 53,414.32 Da | 46.57 | 76.38 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 352 | 382 | 0.03 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 352 | 382 | 0.03 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 137 | 385 | 2.0E-30 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 137 | 385 | 2.0E-30 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 140 | 465 | 3.0E-20 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 140 | 465 | 3.0E-20 | IPR015943 |
| SMART | SM00320 | WD40_4 | 299 | 339 | 0.059 | IPR001680 |
| SMART | SM00320 | WD40_4 | 342 | 383 | 0.099 | IPR001680 |
| SMART | SM00320 | WD40_4 | 120 | 164 | 120.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 299 | 339 | 0.059 | IPR001680 |
| SMART | SM00320 | WD40_4 | 342 | 383 | 0.099 | IPR001680 |
| SMART | SM00320 | WD40_4 | 120 | 164 | 120.0 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 81 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 51 | 81 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 81 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 34 | 50 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 33 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 51 | 81 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 33 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 34 | 50 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62770.1 | Transducin/WD40 repeat-like superfamily protein. Required for autophagosome formation during nutrient deprivation and senescence. | 0 |
| RefSeq | XP_021763109.1 | autophagy-related protein 18a-like [Chenopodium quinoa] | 0 |
| Q93VB2 | Autophagy-related protein 18a OS=Arabidopsis thaliana OX=3702 GN=ATG18A PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C8YQG3 | Autophagy-related protein 18a-like OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology