Basic Information
Locus ID:
Lb1G07235
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 443660336 | 443665330 | + | Lb1G07235 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.08 | 41,727.15 Da | 35.79 | 78.12 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01459 | vWA_copine_like | 23 | 273 | 2.20774E-116 | IPR010734 |
| CDD | cd01459 | vWA_copine_like | 23 | 273 | 2.20774E-116 | IPR010734 |
| CDD | cd16729 | RING-HC_RGLG_plant | 332 | 376 | 1.13782E-21 | - |
| CDD | cd16729 | RING-HC_RGLG_plant | 332 | 376 | 1.13782E-21 | - |
| Pfam | PF07002 | Copine | 69 | 280 | 3.1E-72 | IPR010734 |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 330 | 370 | 4.9E-9 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 330 | 370 | 4.9E-9 | - |
| Pfam | PF07002 | Copine | 69 | 280 | 3.1E-72 | IPR010734 |
| SUPERFAMILY | SSF53300 | vWA-like | 45 | 228 | 1.16E-9 | IPR036465 |
| SUPERFAMILY | SSF57850 | RING/U-box | 327 | 372 | 1.38E-8 | - |
| SUPERFAMILY | SSF53300 | vWA-like | 45 | 228 | 1.16E-9 | IPR036465 |
| SUPERFAMILY | SSF57850 | RING/U-box | 327 | 372 | 1.38E-8 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 320 | 377 | 1.3E-13 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 320 | 377 | 1.3E-13 | IPR013083 |
| SMART | SM00184 | ring_2 | 333 | 365 | 0.0044 | IPR001841 |
| SMART | SM00327 | VWA_4 | 44 | 246 | 0.001 | IPR002035 |
| SMART | SM00327 | VWA_4 | 44 | 246 | 0.001 | IPR002035 |
| SMART | SM00184 | ring_2 | 333 | 365 | 0.0044 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 333 | 366 | 11.264779 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 333 | 366 | 11.264779 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G63970.1 | Copine (Calcium-dependent phospholipid-binding protein) family. | 0 |
| RefSeq | XP_028123068.1 | E3 ubiquitin-protein ligase RGLG3 isoform X1 [Camellia sinensis] | 0 |
| Q8RX26 | E3 ubiquitin-protein ligase RGLG3 OS=Arabidopsis thaliana OX=3702 GN=RGLG3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5B6ZCT3 | RING-type E3 ubiquitin transferase OS=Davidia involucrata OX=16924 GN=Din_010677 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology