Basic Information
Locus ID:
Lb1G06906
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 427159776 | 427170201 | - | Lb1G06906 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.34 | 174,992.30 Da | 42.59 | 85.69 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09272 | RNase_HI_RT_Ty1 | 1430 | 1544 | 2.72221E-60 | - |
| CDD | cd01561 | CBS_like | 16 | 351 | 5.85006E-118 | - |
| CDD | cd09272 | RNase_HI_RT_Ty1 | 1430 | 1544 | 2.72221E-60 | - |
| CDD | cd01561 | CBS_like | 16 | 351 | 5.85006E-118 | - |
| Pfam | PF07727 | Reverse transcriptase (RNA-dependent DNA polymerase) | 1092 | 1336 | 3.7E-75 | IPR013103 |
| Pfam | PF07727 | Reverse transcriptase (RNA-dependent DNA polymerase) | 1092 | 1336 | 3.7E-75 | IPR013103 |
| Pfam | PF13976 | GAG-pre-integrase domain | 849 | 896 | 1.0E-11 | IPR025724 |
| Pfam | PF13976 | GAG-pre-integrase domain | 849 | 896 | 1.0E-11 | IPR025724 |
| Pfam | PF00291 | Pyridoxal-phosphate dependent enzyme | 13 | 267 | 5.3E-53 | IPR001926 |
| Pfam | PF14223 | gag-polypeptide of LTR copia-type | 523 | 654 | 5.1E-38 | - |
| Pfam | PF14223 | gag-polypeptide of LTR copia-type | 523 | 654 | 5.1E-38 | - |
| Pfam | PF00291 | Pyridoxal-phosphate dependent enzyme | 13 | 267 | 5.3E-53 | IPR001926 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 1091 | 1534 | 6.23E-21 | IPR043502 |
| SUPERFAMILY | SSF53686 | Tryptophan synthase beta subunit-like PLP-dependent enzymes | 8 | 267 | 8.77E-80 | IPR036052 |
| SUPERFAMILY | SSF53686 | Tryptophan synthase beta subunit-like PLP-dependent enzymes | 318 | 357 | 9.43E-5 | IPR036052 |
| SUPERFAMILY | SSF53686 | Tryptophan synthase beta subunit-like PLP-dependent enzymes | 318 | 357 | 9.43E-5 | IPR036052 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 911 | 999 | 4.55E-13 | IPR012337 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 911 | 999 | 4.55E-13 | IPR012337 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 1091 | 1534 | 6.23E-21 | IPR043502 |
| SUPERFAMILY | SSF53686 | Tryptophan synthase beta subunit-like PLP-dependent enzymes | 8 | 267 | 8.77E-80 | IPR036052 |
| Gene3D | G3DSA:3.40.50.1100 | - | 49 | 151 | 2.4E-108 | IPR036052 |
| Gene3D | G3DSA:3.40.50.1100 | - | 317 | 376 | 3.1E-10 | IPR036052 |
| Gene3D | G3DSA:3.40.50.1100 | - | 13 | 267 | 2.4E-108 | IPR036052 |
| Gene3D | G3DSA:3.30.420.10 | - | 905 | 1004 | 1.7E-11 | IPR036397 |
| Gene3D | G3DSA:3.40.50.1100 | - | 49 | 151 | 2.4E-108 | IPR036052 |
| Gene3D | G3DSA:3.30.420.10 | - | 905 | 1004 | 1.7E-11 | IPR036397 |
| Gene3D | G3DSA:3.40.50.1100 | - | 317 | 376 | 3.1E-10 | IPR036052 |
| Gene3D | G3DSA:3.40.50.1100 | - | 13 | 267 | 2.4E-108 | IPR036052 |
| TIGRFAM | TIGR01139 | cysK: cysteine synthase A | 12 | 268 | 3.7E-109 | IPR005859 |
| TIGRFAM | TIGR01136 | cysKM: cysteine synthase | 12 | 268 | 4.1E-105 | IPR005856 |
| TIGRFAM | TIGR01139 | cysK: cysteine synthase A | 12 | 268 | 3.7E-109 | IPR005859 |
| TIGRFAM | TIGR01136 | cysKM: cysteine synthase | 12 | 268 | 4.1E-105 | IPR005856 |
| ProSitePatterns | PS00901 | Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. | 37 | 55 | - | IPR001216 |
| ProSitePatterns | PS00901 | Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. | 37 | 55 | - | IPR001216 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 724 | 746 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 721 | 754 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 669 | 688 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 660 | 698 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 721 | 754 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 669 | 688 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 724 | 746 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 660 | 698 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G04940.1 | cysteine synthase D1. Encodes cysteine synthase CysD1. | 0 |
| RefSeq | XP_033129583.1 | uncharacterized protein LOC103874474 [Brassica rapa] | 0 |
| P10978 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8J5XLI0 | Integrase catalytic domain-containing protein OS=Gossypium anomalum OX=47600 GN=CXB51_036958 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology