Basic Information
Locus ID:
Lb1G06892
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Short Name:
TIR1
Description:
transport inhibitor response
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 426471252 | 426475289 | + | Lb1G06892 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.78 | 65,824.69 Da | 42.96 | 97.80 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 63 | 108 | 1.2E-24 | IPR041101 |
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 63 | 108 | 1.2E-24 | IPR041101 |
| Pfam | PF18511 | F-box | 4 | 43 | 1.8E-19 | IPR041567 |
| Pfam | PF18511 | F-box | 4 | 43 | 1.8E-19 | IPR041567 |
| SUPERFAMILY | SSF52047 | RNI-like | 54 | 529 | 1.06E-33 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 4 | 44 | 5.1E-6 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 54 | 529 | 1.06E-33 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 4 | 44 | 5.1E-6 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 41 | 2.8E-18 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 42 | 572 | 1.4E-171 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 42 | 572 | 1.4E-171 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 41 | 2.8E-18 | - |
| SMART | SM00367 | LRR_CC_2 | 125 | 150 | 83.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 367 | 391 | 12.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 100 | 124 | 150.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 476 | 510 | 400.0 | IPR006553 |
| SMART | SM00256 | fbox_2 | 5 | 46 | 0.0014 | IPR001810 |
| SMART | SM00367 | LRR_CC_2 | 206 | 226 | 350.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 427 | 450 | 220.0 | IPR006553 |
| SMART | SM00256 | fbox_2 | 5 | 46 | 0.0014 | IPR001810 |
| SMART | SM00367 | LRR_CC_2 | 125 | 150 | 83.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 476 | 510 | 400.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 427 | 450 | 220.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 367 | 391 | 12.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 206 | 226 | 350.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 100 | 124 | 150.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 284 | 308 | 410.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 284 | 308 | 410.0 | IPR006553 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62980.1 | F-box/RNI-like superfamily protein. Encodes an auxin receptor that mediates auxin-regulated transcription. It contains leucine-rich repeats and an F-box and interacts with ASK1, ASK2 and AtCUL1 to form SCF-TIR1, an SCF ubiquitin ligase complex. Related to yeast Grr1p and human SKP2 proteins, involved in ubiquitin-mediated processes. Required for normal response to auxin and repressed in response to flagellin. As part of the SCF complex and in the presence of auxin, TIR1 interacts with Aux/IAA transcriptional repressor proteins and mediates their degradation. | 0 |
| RefSeq | XP_021773054.1 | protein TRANSPORT INHIBITOR RESPONSE 1-like [Chenopodium quinoa] | 0 |
| Q570C0 | Protein TRANSPORT INHIBITOR RESPONSE 1 OS=Arabidopsis thaliana OX=3702 GN=TIR1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A803KPI2 | F-box domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology