Basic Information
Locus ID:
Lb1G06675
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 413916165 | 413917279 | + | Lb1G06675 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.14 | 33,693.35 Da | 34.62 | 88.66 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 49 | 163 | 2.6607E-25 | IPR000608 |
| CDD | cd00195 | UBCc | 49 | 163 | 2.6607E-25 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 52 | 136 | 5.8E-17 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 52 | 136 | 5.8E-17 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 40 | 190 | 7.66E-31 | IPR016135 |
| SUPERFAMILY | SSF54495 | UBC-like | 40 | 190 | 7.66E-31 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 9 | 133 | 1.6E-36 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 9 | 133 | 1.6E-36 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 134 | 223 | 2.7E-18 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 134 | 223 | 2.7E-18 | IPR016135 |
| SMART | SM00212 | ubc_7 | 50 | 181 | 1.2E-6 | - |
| SMART | SM00212 | ubc_7 | 50 | 181 | 1.2E-6 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 47 | 204 | 23.489513 | IPR000608 |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 47 | 204 | 23.489513 | IPR000608 |
| Coils | Coil | Coil | 247 | 277 | - | - |
| Coils | Coil | Coil | 247 | 277 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15355.1 | ubiquitin-conjugating enzyme 25. | 0 |
| RefSeq | XP_021737936.1 | probable ubiquitin-conjugating enzyme E2 25 [Chenopodium quinoa] | 0 |
| Q9C918 | Putative ubiquitin-conjugating enzyme E2 38 OS=Arabidopsis thaliana OX=3702 GN=UBC38 PE=3 SV=2 | 0 | |
| TrEMBL | A0A0K9QAZ7 | UBC core domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_199360 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology