Basic Information
Locus ID:
Lb1G06674
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 413908685 | 413910109 | + | Lb1G06674 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.89 | 42,442.42 Da | 40.54 | 82.13 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 61 | 188 | 2.90345E-33 | IPR000608 |
| CDD | cd00195 | UBCc | 61 | 188 | 2.90345E-33 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 64 | 208 | 1.0E-23 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 64 | 208 | 1.0E-23 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 57 | 226 | 3.54E-38 | IPR016135 |
| SUPERFAMILY | SSF54495 | UBC-like | 57 | 226 | 3.54E-38 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 12 | 330 | 1.9E-72 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 12 | 330 | 1.9E-72 | IPR016135 |
| SMART | SM00212 | ubc_7 | 62 | 219 | 2.0E-22 | - |
| SMART | SM00212 | ubc_7 | 62 | 219 | 2.0E-22 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 59 | 219 | 33.367935 | IPR000608 |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 59 | 219 | 33.367935 | IPR000608 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G33770.1 | phosphate 2. Encodes a ubiquitin-conjugating E2 enzyme. UBC24 mRNA accumulation is suppressed by miR399f, miR399b and miR399c. Involved in phosphate starvation response. | 0 |
| RefSeq | XP_021737936.1 | probable ubiquitin-conjugating enzyme E2 25 [Chenopodium quinoa] | 0 |
| Q9C918 | Putative ubiquitin-conjugating enzyme E2 38 OS=Arabidopsis thaliana OX=3702 GN=UBC38 PE=3 SV=2 | 0 | |
| TrEMBL | A0A803MJN1 | UBC core domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology