halophFGD

Basic Information

Locus ID: Lb1G06640

Species & Taxonomic ID: Limonium bicolor & 293754

Genome Assembly: GCA_023374045.1

Description: Leucine Rich repeat

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr01	412682392	412686276	-	Lb1G06640

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.29	68,652.59 Da	43.83	113.33	0.27

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF13516	Leucine Rich repeat	405	427	0.14	IPR001611
Pfam	PF13516	Leucine Rich repeat	466	488	0.0039	IPR001611
Pfam	PF13516	Leucine Rich repeat	542	560	0.0018	IPR001611
Pfam	PF13516	Leucine Rich repeat	353	376	0.24	IPR001611
Pfam	PF13516	Leucine Rich repeat	250	269	1.0	IPR001611
Pfam	PF13516	Leucine Rich repeat	466	488	0.0039	IPR001611
Pfam	PF13516	Leucine Rich repeat	405	427	0.14	IPR001611
Pfam	PF13516	Leucine Rich repeat	250	269	1.0	IPR001611
Pfam	PF13516	Leucine Rich repeat	353	376	0.24	IPR001611
Pfam	PF13516	Leucine Rich repeat	542	560	0.0018	IPR001611
SUPERFAMILY	SSF52047	RNI-like	294	599	7.85E-33	-
SUPERFAMILY	SSF52047	RNI-like	34	265	8.63E-30	-
SUPERFAMILY	SSF52047	RNI-like	294	599	7.85E-33	-
SUPERFAMILY	SSF52047	RNI-like	34	265	8.63E-30	-
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	292	466	5.1E-32	IPR032675
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	5	291	1.5E-35	IPR032675
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	5	291	1.5E-35	IPR032675
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	292	466	5.1E-32	IPR032675
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	467	625	5.0E-25	IPR032675
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	467	625	5.0E-25	IPR032675
SMART	SM00367	LRR_CC_2	542	566	4.0	IPR006553
SMART	SM00367	LRR_CC_2	353	378	4.5E-4	IPR006553
SMART	SM00367	LRR_CC_2	148	173	0.11	IPR006553
SMART	SM00367	LRR_CC_2	405	430	13.0	IPR006553
SMART	SM00367	LRR_CC_2	516	541	0.0017	IPR006553
SMART	SM00367	LRR_CC_2	225	249	21.0	IPR006553
SMART	SM00367	LRR_CC_2	431	455	14.0	IPR006553
SMART	SM00367	LRR_CC_2	465	490	0.0079	IPR006553
SMART	SM00367	LRR_CC_2	542	566	4.0	IPR006553
SMART	SM00367	LRR_CC_2	200	224	10.0	IPR006553
SMART	SM00367	LRR_CC_2	327	352	0.048	IPR006553
SMART	SM00367	LRR_CC_2	379	404	1.7	IPR006553
SMART	SM00367	LRR_CC_2	174	199	0.36	IPR006553
SMART	SM00367	LRR_CC_2	250	275	0.082	IPR006553
SMART	SM00367	LRR_CC_2	405	430	13.0	IPR006553
SMART	SM00367	LRR_CC_2	516	541	0.0017	IPR006553
SMART	SM00367	LRR_CC_2	379	404	1.7	IPR006553
SMART	SM00367	LRR_CC_2	327	352	0.048	IPR006553
SMART	SM00367	LRR_CC_2	465	490	0.0079	IPR006553
SMART	SM00367	LRR_CC_2	174	199	0.36	IPR006553
SMART	SM00367	LRR_CC_2	250	275	0.082	IPR006553
SMART	SM00367	LRR_CC_2	353	378	4.5E-4	IPR006553
SMART	SM00367	LRR_CC_2	225	249	21.0	IPR006553
SMART	SM00367	LRR_CC_2	148	173	0.11	IPR006553
SMART	SM00367	LRR_CC_2	431	455	14.0	IPR006553
SMART	SM00367	LRR_CC_2	200	224	10.0	IPR006553

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K10268 (F-box and leucine-rich repeat protein 2/20)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G27920.1	F-box family protein.
RefSeq	XP_041018732.1	F-box/LRR-repeat protein 3 [Juglans microcarpa x Juglans regia]
Swiss-Prot	Q8RWU5	F-box/LRR-repeat protein 3 OS=Arabidopsis thaliana OX=3702 GN=FBL3 PE=2 SV=1
TrEMBL	A0A6P5MBZ3	F-box/LRR-repeat protein 3 isoform X2 OS=Arachis duranensis OX=130453 GN=LOC107492206 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg1418, jg16690, jg21205, jg3211
Aizoaceae	Mesembryanthemum crystallinum	2	gene_14544, gene_5979
Amaranthaceae	Atriplex hortensis	2	Ah005710, Ah031358
Amaranthaceae	Beta vulgaris	2	BVRB_7g158000, BVRB_7g175510
Amaranthaceae	Salicornia bigelovii	5	Sbi_jg2264, Sbi_jg26871, Sbi_jg33702, Sbi_jg33703 ... Sbi_jg34233
Amaranthaceae	Salicornia europaea	2	Seu_jg2491, Seu_jg8392
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00003029, GOSA_00005995, GOSA_00015377
Amaranthaceae	Suaeda glauca	7	Sgl24439, Sgl29614, Sgl70996, Sgl73103, Sgl74546, Sgl74587 ... Sgl76652
Amaranthaceae	Chenopodium album	8	gene:ENSEOMG00000006019, gene:ENSEOMG00000007524 ... gene:ENSEOMG00000036028, gene:ENSEOMG00000036471, gene:ENSEOMG00000039346, gene:ENSEOMG00000039501, gene:ENSEOMG00000040307, gene:ENSEOMG00000042395
Amaranthaceae	Chenopodium quinoa	6	CQ.Regalona.r1.2BG0010670, CQ.Regalona.r1.2BG0010680 ... CQ.Regalona.r1.4BG0007950, CQ.Regalona.r1.7AG0001420, CQ.Regalona.r1.7AG0021980, CQ.Regalona.r1.7BG0024540
Anacardiaceae	Pistacia vera	1	pistato.v30268050
Apiaceae	Apium graveolens	3	Ag10G00968, Ag2G01147, Ag7G01578
Arecaceae	Cocos nucifera	3	COCNU_01G002030, COCNU_04G003940, COCNU_12G002630
Arecaceae	Phoenix dactylifera	1	gene-LOC103719773
Asparagaceae	Asparagus officinalis	2	AsparagusV1_02.2146.V1.1, AsparagusV1_Unassigned.77.V1.1
Asteraceae	Flaveria trinervia	1	Ftri4G31147
Brassicaceae	Arabidopsis thaliana	2	AT5G01720.1, AT5G27920.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10003812m.g.v1.0, Thhalv10012898m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp2g21020.v2.2, Sp6g40980.v2.2
Brassicaceae	Brassica nigra	4	BniB02g078910.2N, BniB05g066790.2N, BniB07g038770.2N ... BniB08g000130.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq06G1150, Ceq08G0943, Ceq08G1797
Casuarinaceae	Casuarina glauca	3	Cgl06G1200, Cgl08G0962, Cgl08G1858
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno03g01680, gene.Cymno18g01150
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate01g02460, gene.Thate02g08970
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-8246
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG01.930, evm.TU.LG03.2495
Plantaginaceae	Plantago ovata	2	Pov_00006957, Pov_00007221
Plumbaginaceae	Limonium bicolor	1	Lb1G06640
Poaceae	Echinochloa crus-galli	11	AH04.2116, AH04.44, AH05.3708, AH05.66, BH04.2199, BH04.53 ... BH05.3746, CH04.169, CH04.2535, CH05.20, CH05.3938
Poaceae	Eleusine coracana subsp. coracana	8	gene-QOZ80_5AG0378810, gene-QOZ80_5AG0393420 ... gene-QOZ80_5BG0425920, gene-QOZ80_5BG0441650, gene-QOZ80_9AG0672190, gene-QOZ80_9AG0691710, gene-QOZ80_9BG0695730, gene-QOZ80_9BG0718000
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.5HG0444540.1, HORVU.MOREX.r3.5HG0465190.1
Poaceae	Lolium multiflorum	2	gene-QYE76_001914, gene-QYE76_003718
Poaceae	Oryza coarctata	3	Oco23G008100, Oco24G007700, Ocoptg000061lG000380
Poaceae	Oryza sativa	3	LOC_Os11g01780.1, LOC_Os12g01760.1, LOC_Os12g36670.1
Poaceae	Paspalum vaginatum	4	gene-BS78_05G007700, gene-BS78_05G231300 ... gene-BS78_08G002500, gene-BS78_08G093600
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0204318, Pt_Chr0702857, Pt_Chr0703813, Pt_Chr0705238
Poaceae	Sporobolus alterniflorus	12	Chr03G008220, Chr03G022770, Chr04G016790, Chr06G017460 ... Chr07G014590, Chr16G008150, Chr17G007220, Chr19G009500, Chr19G011480, Chr27G004660, Chr27G006950, Chr31G008050
Poaceae	Thinopyrum elongatum	2	Tel5E01G180000, Tel5E01G261200
Poaceae	Triticum dicoccoides	7	gene_TRIDC2BG022870, gene_TRIDC4BG003160 ... gene_TRIDC5AG014220, gene_TRIDC5AG025200, gene_TRIDC5BG016190, gene_TRIDC5BG026390, gene_TRIDC7BG003710
Poaceae	Triticum aestivum	6	TraesCS5A02G091800.2, TraesCS5A02G150800.2 ... TraesCS5B02G097800.2, TraesCS5B02G149400.1, TraesCS5D02G103900.3, TraesCS5D02G155900.1
Poaceae	Zea mays	7	Zm00001eb068870_P001, Zm00001eb094050_P001 ... Zm00001eb137200_P001, Zm00001eb163310_P002, Zm00001eb165480_P001, Zm00001eb261850_P001, Zm00001eb410120_P003
Poaceae	Zoysia japonica	4	nbis-gene-25830, nbis-gene-30302, nbis-gene-46015 ... nbis-gene-50006
Poaceae	Zoysia macrostachya	4	Zma_g19121, Zma_g24607, Zma_g25171, Zma_g25953
Portulacaceae	Portulaca oleracea	13	evm.TU.LG01.1167, evm.TU.LG01.500, evm.TU.LG03.1134 ... evm.TU.LG04.1039, evm.TU.LG06.579, evm.TU.LG07.931, evm.TU.LG08.705, evm.TU.LG15.839, evm.TU.LG16.1642, evm.TU.LG19.944, evm.TU.LG22.1315, evm.TU.LG23.394, evm.TU.LG26.22
Posidoniaceae	Posidonia oceanica	2	gene.Posoc02g09140, gene.Posoc07g11900
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_1_RagTag.1880, evm.TU.Scaffold_1_RagTag.94 ... evm.TU.Scaffold_2_RagTag.571
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-4628, nbisL1-mrna-5643, nbisL1-mrna-8182
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-2107, nbisL1-mrna-5156
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-3650, nbisL1-mrna-5179, nbisL1-mrna-9623
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000009l.982, evm.TU.utg000012l.68 ... evm.TU.utg000016l.739
Rhizophoraceae	Kandelia obovata	3	Maker00006080, Maker00011035, Maker00016912
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-2651, nbisL1-mrna-4914, nbisL1-mrna-7890
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-13814, nbisL1-mrna-16652, nbisL1-mrna-84
Salicaceae	Populus euphratica	6	populus_peu11481, populus_peu13333, populus_peu15661 ... populus_peu16980, populus_peu18603, populus_peu25348
Solanaceae	Lycium barbarum	2	gene-LOC132606760, gene-LOC132645993
Solanaceae	Solanum chilense	2	SOLCI000857800, SOLCI004699000
Solanaceae	Solanum pennellii	2	gene-LOC107007469, gene-LOC107032076
Tamaricaceae	Reaumuria soongarica	3	gene_18136, gene_5713, gene_6639
Tamaricaceae	Tamarix chinensis	3	TC02G0853, TC02G2398, TC07G1061
Zosteraceae	Zostera marina	1	Zosma01g17700.v3.1