Basic Information
Locus ID:
Lb1G06425
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
PHD finger protein MALE
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 404160546 | 404163198 | + | Lb1G06425 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.50 | 81,345.02 Da | 40.71 | 83.40 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15556 | PHD_MMD1_like | 669 | 714 | 5.07803E-24 | - |
| CDD | cd15556 | PHD_MMD1_like | 669 | 714 | 5.07803E-24 | - |
| Pfam | PF00628 | PHD-finger | 670 | 716 | 2.9E-9 | IPR019787 |
| Pfam | PF00628 | PHD-finger | 670 | 716 | 2.9E-9 | IPR019787 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 666 | 718 | 2.88E-13 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 666 | 718 | 2.88E-13 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 653 | 719 | 2.5E-15 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 653 | 719 | 2.5E-15 | IPR013083 |
| SMART | SM00249 | PHD_3 | 669 | 715 | 1.6E-7 | IPR001965 |
| SMART | SM00249 | PHD_3 | 669 | 715 | 1.6E-7 | IPR001965 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 670 | 714 | - | IPR019786 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 670 | 714 | - | IPR019786 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22260.1 | RING/FYVE/PHD zinc finger superfamily protein. Sporophytic factor controlling anther and pollen development. Mutants fail to make functional pollen;pollen degeneration occurs after microspore release and the tapetum also appears abnormally vacuolated. Similar to PHD-finger motif transcription factors. | 0 |
| RefSeq | XP_021771883.1 | PHD finger protein MALE STERILITY 1-like [Chenopodium quinoa] | 0 |
| Q9FMS5 | PHD finger protein MALE STERILITY 1 OS=Arabidopsis thaliana OX=3702 GN=MS1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803KNH8 | PHD domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology