HalophFGD

  • Home
  • Species
  • Search
  • Tools
    • Blast
    • GO enrichment
    • KEGG enrichment
    • Genome browser
    • Sequence extract
    • Network
    • Motif Enrichment
    • Motif Scan
    • Primer Design
  • Download
  • Manual
  • Contact
Basic Information
Locus ID: Lb1G06209
Species & Taxonomic ID: Limonium bicolor & 293754
Genome Assembly: GCA_023374045.1
Description:
Maps and Mapping Data
Chromosome Start End Strand ID
chr01 396087841 396098498 - Lb1G06209
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
8.91 125,321.01 Da 39.55 80.87 -0.30
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
Pfam PF00665 Integrase core domain 693 789 2.0E-8 IPR001584
Pfam PF07727 Reverse transcriptase (RNA-dependent DNA polymerase) 1067 1123 1.3E-8 IPR013103
Pfam PF13855 Leucine rich repeat 180 240 3.0E-9 IPR001611
Pfam PF13855 Leucine rich repeat 277 336 1.1E-7 IPR001611
Pfam PF13855 Leucine rich repeat 110 168 5.3E-9 IPR001611
Pfam PF13855 Leucine rich repeat 277 336 1.1E-7 IPR001611
Pfam PF13976 GAG-pre-integrase domain 609 677 1.2E-9 IPR025724
Pfam PF07727 Reverse transcriptase (RNA-dependent DNA polymerase) 1067 1123 1.3E-8 IPR013103
Pfam PF13855 Leucine rich repeat 180 240 3.0E-9 IPR001611
Pfam PF13855 Leucine rich repeat 110 168 5.3E-9 IPR001611
Pfam PF13976 GAG-pre-integrase domain 609 677 1.2E-9 IPR025724
Pfam PF00665 Integrase core domain 693 789 2.0E-8 IPR001584
SUPERFAMILY SSF52047 RNI-like 43 373 6.36E-64 -
SUPERFAMILY SSF52047 RNI-like 43 373 6.36E-64 -
SUPERFAMILY SSF52058 L domain-like 358 476 1.13E-21 -
SUPERFAMILY SSF53098 Ribonuclease H-like 690 847 6.7E-35 IPR012337
SUPERFAMILY SSF52058 L domain-like 358 476 1.13E-21 -
SUPERFAMILY SSF53098 Ribonuclease H-like 690 847 6.7E-35 IPR012337
Gene3D G3DSA:3.80.10.10 Ribonuclease Inhibitor 239 503 1.4E-62 IPR032675
Gene3D G3DSA:3.80.10.10 Ribonuclease Inhibitor 2 148 4.8E-39 IPR032675
Gene3D G3DSA:3.80.10.10 Ribonuclease Inhibitor 239 503 1.4E-62 IPR032675
Gene3D G3DSA:3.30.420.10 - 686 862 1.2E-34 IPR036397
Gene3D G3DSA:3.30.420.10 - 686 862 1.2E-34 IPR036397
Gene3D G3DSA:3.80.10.10 Ribonuclease Inhibitor 149 238 8.2E-27 IPR032675
Gene3D G3DSA:3.80.10.10 Ribonuclease Inhibitor 149 238 8.2E-27 IPR032675
Gene3D G3DSA:3.80.10.10 Ribonuclease Inhibitor 2 148 4.8E-39 IPR032675
SMART SM00365 LRR_sd22_2 155 178 120.0 -
SMART SM00365 LRR_sd22_2 83 98 190.0 -
SMART SM00365 LRR_sd22_2 451 477 640.0 -
SMART SM00365 LRR_sd22_2 403 429 590.0 -
SMART SM00369 LRR_typ_2 299 322 26.0 IPR003591
SMART SM00369 LRR_typ_2 203 224 62.0 IPR003591
SMART SM00369 LRR_typ_2 83 107 23.0 IPR003591
SMART SM00369 LRR_typ_2 155 179 1.8 IPR003591
SMART SM00369 LRR_typ_2 323 346 130.0 IPR003591
SMART SM00369 LRR_typ_2 227 252 170.0 IPR003591
SMART SM00365 LRR_sd22_2 179 208 8.4 -
SMART SM00369 LRR_typ_2 451 482 70.0 IPR003591
SMART SM00365 LRR_sd22_2 275 301 720.0 -
SMART SM00365 LRR_sd22_2 403 429 590.0 -
SMART SM00369 LRR_typ_2 227 252 170.0 IPR003591
SMART SM00369 LRR_typ_2 323 346 130.0 IPR003591
SMART SM00369 LRR_typ_2 451 482 70.0 IPR003591
SMART SM00365 LRR_sd22_2 83 98 190.0 -
SMART SM00369 LRR_typ_2 299 322 26.0 IPR003591
SMART SM00369 LRR_typ_2 83 107 23.0 IPR003591
SMART SM00369 LRR_typ_2 203 224 62.0 IPR003591
SMART SM00365 LRR_sd22_2 451 477 640.0 -
SMART SM00365 LRR_sd22_2 155 178 120.0 -
SMART SM00365 LRR_sd22_2 275 301 720.0 -
SMART SM00369 LRR_typ_2 155 179 1.8 IPR003591
SMART SM00365 LRR_sd22_2 179 208 8.4 -
ProSiteProfiles PS50994 Integrase catalytic domain profile. 689 853 21.13344 IPR001584
ProSiteProfiles PS51450 Leucine-rich repeat profile. 157 179 7.1036 IPR001611
ProSiteProfiles PS51450 Leucine-rich repeat profile. 205 226 7.011191 IPR001611
ProSiteProfiles PS50994 Integrase catalytic domain profile. 689 853 21.13344 IPR001584
ProSiteProfiles PS51450 Leucine-rich repeat profile. 205 226 7.011191 IPR001611
ProSiteProfiles PS51450 Leucine-rich repeat profile. 157 179 7.1036 IPR001611
PRINTS PR00019 Leucine-rich repeat signature 86 99 5.3E-5 -
PRINTS PR00019 Leucine-rich repeat signature 86 99 5.3E-5 -
PRINTS PR00019 Leucine-rich repeat signature 203 216 5.3E-5 -
PRINTS PR00019 Leucine-rich repeat signature 203 216 5.3E-5 -
MobiDBLite mobidb-lite consensus disorder prediction 974 989 - -
MobiDBLite mobidb-lite consensus disorder prediction 974 989 - -
MobiDBLite mobidb-lite consensus disorder prediction 974 1002 - -
MobiDBLite mobidb-lite consensus disorder prediction 974 1002 - -
Gene Ontology
Biological Process:
GO:0015074 (DNA integration)
Molecular Function:
GO:0003676 (nucleic acid binding) GO:0005515 (protein binding)
Best hit
Source Best Hit ID Description E-value
RefSeq XP_042982037.1 uncharacterized protein LOC122311522 isoform X1 [Carya illinoinensis] 0
Swiss-Prot Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1 0
TrEMBL A0A6A1WRJ5 Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Morella rubra OX=262757 GN=CJ030_MR1G013805 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Amaranthaceae Salicornia bigelovii 11 Sbi_jg22532, Sbi_jg22994, Sbi_jg35991, Sbi_jg47084 ...
Sbi_jg5628, Sbi_jg58328, Sbi_jg60530, Sbi_jg61478, Sbi_jg63342, Sbi_jg8665, Sbi_jg9642
Amaranthaceae Salicornia europaea 3 Seu_jg13583, Seu_jg220, Seu_jg24372
Amaranthaceae Suaeda glauca 22 Sgl20258, Sgl21425, Sgl22765, Sgl23137, Sgl26539, Sgl26751 ...
Sgl28247, Sgl28348, Sgl34681, Sgl35523, Sgl40897, Sgl43954, Sgl43993, Sgl48719, Sgl48762, Sgl51791, Sgl52022, Sgl53267, Sgl54094, Sgl55419, Sgl57325, Sgl58530
Amaranthaceae Chenopodium album 2 gene:ENSEOMG00000004351, gene:ENSEOMG00000049261
Anacardiaceae Pistacia vera 1 pistato.v30096180
Asteraceae Flaveria trinervia 1 Ftri3G03871
Brassicaceae Schrenkiella parvula 1 Sp7g03155.v2.2
Brassicaceae Brassica nigra 13 BniB01g008680.2N, BniB01g011550.2N, BniB01g033040.2N ...
BniB02g033300.2N, BniB04g047250.2N, BniB04g052240.2N, BniB05g063000.2N, BniB06g045160.2N, BniB07g001750.2N, BniB07g029480.2N, BniB07g034250.2N, BniB07g043950.2N, BniB08g017720.2N
Cymodoceaceae Cymodocea nodosa 3 gene.Cymno02g08420, gene.Cymno02g12120, gene.Cymno07g04820
Hydrocharitaceae Thalassia testudinum 2 gene.Thate01g15590, gene.Thate06g10480
Malvaceae Hibiscus hamabo Siebold & Zucc. 1 nbisL1-mrna-7277
Plantaginaceae Plantago ovata 7 Pov_00001112, Pov_00012497, Pov_00029344, Pov_00029907 ...
Pov_00031130, Pov_00035796, Pov_00041323
Plumbaginaceae Limonium bicolor 2 Lb1G00201, Lb1G06209
Poaceae Echinochloa crus-galli 3 CH01.4204, CH02.4285, CH02.754
Poaceae Lolium multiflorum 23 gene-QYE76_000053, gene-QYE76_005675, gene-QYE76_009235 ...
gene-QYE76_009560, gene-QYE76_012081, gene-QYE76_012926, gene-QYE76_013696, gene-QYE76_016216, gene-QYE76_022787, gene-QYE76_024878, gene-QYE76_025602, gene-QYE76_025751, gene-QYE76_034510, gene-QYE76_038282, gene-QYE76_053921, gene-QYE76_054335, gene-QYE76_055424, gene-QYE76_057980, gene-QYE76_059298, gene-QYE76_062503, gene-QYE76_064015, gene-QYE76_066038, gene-QYE76_071481
Poaceae Oryza coarctata 7 Oco02G011690, Oco02G031780, Oco03G007110, Oco03G009910 ...
Oco09G006540, Oco16G006370, Oco22G008980
Poaceae Sporobolus alterniflorus 24 Chr01G024190, Chr01G024200, Chr05G013180, Chr05G013190 ...
Chr07G010460, Chr07G013140, Chr08G012100, Chr08G012270, Chr09G005120, Chr12G015710, Chr13G016330, Chr15G017680, Chr16G013230, Chr17G009520, Chr17G009530, Chr18G003390, Chr21G013910, Chr24G013840, Chr25G010030, Chr25G010040, Chr25G014830, Chr25G014840, Chr29G009710, Chr30G014440
Poaceae Zoysia japonica 7 nbis-gene-15370, nbis-gene-31910, nbis-gene-43348 ...
nbis-gene-5120, nbis-gene-56072, nbis-gene-58384, nbis-gene-58844
Posidoniaceae Posidonia oceanica 1 gene.Posoc01g29300
Solanaceae Solanum pennellii 1 gene-LOC114075978
Tamaricaceae Reaumuria soongarica 3 MSTRG.20127_chr11_-, STRG.30077_chr10_+, gene_8045
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.